Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27142g00001 CTCTTGGTTGCATCTCACAAGGTCCTTGCTCAGCAATCTCGGGTCGGAAGCGGCTTTGTTTCTGTCTCCCGAGAGCGTTCCAGTGGTAGGACGCGAGATCCTAAGACGCGTTATATTCAGGAGGTCTCACTGCTTTTTCGCCTGCTGCGTTGTACCGTGATTTGGATTTCTAGGCCAGCAGTAACATGCAGATATTTGTCTGGAAATGTCCCGCTTTGGAACGCCATGCTTGGTGGGCATGCAAATGCAGTACAAGTCTTGGAAACAAATGGAGGTACTTTAGAAGGTTGTCCTGTTGGACACTATGCATGTATTGCGGCTTCACTCGATAACATGGATGCGCTACAAGCTCTTGGCCATCGTGATAATCAATTTCTTTCCGTCCCAAATGACCACGGGCGAACAGCATTACATGTGGCTATGGTTCGAGACAACTTTCCTATGGTTCAATATCTTGTGGAAAGTGGTGTACCGATGGATGAAGATGACAACTATGGTGATAGCGCATATGTCCTAGCAACGAGACATGGTGGTGATCAAATTGTAAACTATTTGGAGTTAATGCTACTTCCGCAACTTATTTAG 585 0.465 LLVASHKVLAQQSRVGSGFVSVSRERSSGRTRDPKTRYIQEVSLLFRLLRCTVIWISRPAVTCRYLSGNVPLWNAMLGGHANAVQVLETNGGTLEGCPVGHYACIAASLDNMDALQALGHRDNQFLSVPNDHGRTALHVAMVRDNFPMVQYLVESGVPMDEDDNYGDSAYVLATRHGGDQIVNYLELMLLPQLI 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27142g00001 194 SMART ANK_2a 132 161 IPR002110 GO:0005515
Trme27142g00001 194 SMART ANK_2a 67 96 IPR002110 GO:0005515
Trme27142g00001 194 SUPERFAMILY Ankyrin repeat 63 185 IPR036770 -
Trme27142g00001 194 ProSiteProfiles Ankyrin repeat region circular profile. 132 164 - -
Trme27142g00001 194 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Trme27142g00001 194 Gene3D - 42 187 IPR036770 -
Trme27142g00001 194 Pfam Ankyrin repeats (3 copies) 75 157 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27142g00001 49 181 Ion Channels AT2G26650 35.075 7.10e-20 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27142g00001 K21867 - pop:18107645 98.5969