Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27131g00001 ATGCTGAAGATGGAGCTTATGGTGCTAAGCACATTGAAGTGGAGAATGCAAGGAATTACACCTTTCTCCTACATTGACTATTTCCTTAACAAGGTTAATGGTGATCAAGGTCCAATAGGAGATTTAGTGTTGCAATCTTTCCAACTCATACAGAGTACTGCAAGAGGAATTGACTTCATTCAATTCAGACCATCTGAAATTGCAGCAGCTGTTGCTGTGACATTATCTGTGAAGGGTGAAAACCAAACTGTTCAAACTGAGAGAGCAGTTTCTCTTCTGATTGAATACGTAGAAAAGGTACTAATGAATCAATGA 315 0.3873 MLKMELMVLSTLKWRMQGITPFSYIDYFLNKVNGDQGPIGDLVLQSFQLIQSTARGIDFIQFRPSEIAAAVAVTLSVKGENQTVQTERAVSLLIEYVEKVLMNQ 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27131g00001 104 FunFam D6-type cyclin 7 104 - -
Trme27131g00001 104 Pfam Cyclin, C-terminal domain 19 96 IPR004367 -
Trme27131g00001 104 Gene3D - 1 103 - -
Trme27131g00001 104 SUPERFAMILY Cyclin-like 2 76 IPR036915 -
Trme27131g00001 104 CDD CYCLIN_AtCycD-like_rpt2 19 99 - -
Trme27131g00001 104 PANTHER CYCLINS 1 83 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27131g00001 Trme-Chr27131 199 715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27131g00001 3 103 Core Cell Cycle Gene Families AT5G65420 52.427 5.35e-27 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27131g00001 K18810 - tpra:123922384 180.259