Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27117g00001 ATGTTTCTTTTAATAGCTCCCGCTGCTCTGAAAGTCAGAGGGAAGCAGCGTTGTTACTTGGACAGTTCGCAGCAACTGATTCAGACTGTTCACATTGTACAGAGGGGTGCTGTCCGGCCTTTGATAGAGATGCTTTCGTCTCCTGATGTACAGCTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTGGTCCCACTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAG 324 0.4691 MFLLIAPAALKVRGKQRCYLDSSQQLIQTVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENE 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27117g00001 108 Pfam Armadillo/beta-catenin-like repeat 28 64 IPR000225 GO:0005515
Trme27117g00001 108 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 77 108 IPR000225 GO:0005515
Trme27117g00001 108 Gene3D - 18 108 IPR011989 -
Trme27117g00001 108 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 36 78 IPR000225 GO:0005515
Trme27117g00001 108 SMART arm_5 24 65 IPR000225 GO:0005515
Trme27117g00001 108 SMART arm_5 66 106 IPR000225 GO:0005515
Trme27117g00001 108 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 29 108 IPR044282 -
Trme27117g00001 108 SUPERFAMILY ARM repeat 28 107 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27117g00001 Trme-Chr27117 78 1151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27117g00001 30 105 U-box Gene Family AT5G40140 39.474 1.16e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27117g00001 - - pop:7457860 154.451