Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27079g00001 TTTTCATTTGCTGCATTTTCTCAGCAGTATCCAAGAGCATCTGAGGAGCATGTTCCACTATCTTCTCACCAGGGTGCTCCCTCTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAATCTAGATACTTCGAGTCCTGATACTTATAGACCACCTCCTGCTCCTCTCCCTTTCAATGTGACATCTGGTGCCACTCAGACTGCACCTGTGGCTCAAGAAATTAGCTGTGACAAGAACAATACATCCTCACATTCTACAAATTCTAATTCAGTTCAAGAACCATCTGGAGACAATCAAACCTCACCTAAGTCAGAAGAACCGAAGGAATCTGAATGCAAAGGTCAGACTGATTTAGAGCTAGACTCGGCAAAGAATTCTGAAATTGAACTTTCAAAGTTGGGTGAACCTATAAATTTAGAGGAAGAGGAGGATACATGCCCAATATGTTTAGAAGAATATGATGCAGAAAATCCAAAACTCACCACAAATTGTGACCATCATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAATCTTGCCCTGTCTGCGATCAGGTTATGGTTTTAAGCCCTTCCATTGTATAG 591 0.4179 FSFAAFSQQYPRASEEHVPLSSHQGAPSAFSGRLLVDTNLDTSSPDTYRPPPAPLPFNVTSGATQTAPVAQEISCDKNNTSSHSTNSNSVQEPSGDNQTSPKSEEPKESECKGQTDLELDSAKNSEIELSKLGEPINLEEEEDTCPICLEEYDAENPKLTTNCDHHFHLACILEWMERSESCPVCDQVMVLSPSIV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27079g00001 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 191 IPR013083 -
Trme27079g00001 196 ProSiteProfiles Zinc finger RING-type profile. 145 186 IPR001841 -
Trme27079g00001 196 MobiDBLite consensus disorder prediction 76 100 - -
Trme27079g00001 196 SMART ring_2 145 185 IPR001841 -
Trme27079g00001 196 MobiDBLite consensus disorder prediction 1 61 - -
Trme27079g00001 196 FunFam Putative E3 ubiquitin-protein ligase RHB1A 122 190 - -
Trme27079g00001 196 MobiDBLite consensus disorder prediction 76 124 - -
Trme27079g00001 196 Pfam Ring finger domain 143 185 IPR001841 -
Trme27079g00001 196 MobiDBLite consensus disorder prediction 101 124 - -
Trme27079g00001 196 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 24 192 - -
Trme27079g00001 196 CDD RING-H2_AIRP1-like 141 189 - -
Trme27079g00001 196 SUPERFAMILY RING/U-box 139 192 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27079g00001 10 195 C3H Transcription Factor Family AT5G41350 53.684 2.49e-56 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27079g00001 - - gmx:100816369 303.138