Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme27040g00001 ATGGGTAGATCTCCTTGTTGTGAAAAAGAGCACACAAACAAAGGTGCTTGGACAAAAGAAGAAGATGAACGTCTCATTAACTACATCAAGCTTCATGGGGAAGGTTGTTGGAGATCTCTTCCAAAAGCTGCTGGACTGCTAAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCTGATCTTAAGAGGGGAAACTTCACCGAACAAGAAGATGATCTTATTATCAACCTCCACACCTTACTTGGAAACAA 263 0.4183 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDDLIINLHTLLGN 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme27040g00001 87 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trme27040g00001 87 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 87 - -
Trme27040g00001 87 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trme27040g00001 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 87 IPR017930 -
Trme27040g00001 87 FunFam MYB-related transcription factor 13 66 - -
Trme27040g00001 87 SUPERFAMILY Homeodomain-like 15 87 IPR009057 -
Trme27040g00001 87 CDD SANT 16 61 IPR001005 -
Trme27040g00001 87 Gene3D - 14 66 - -
Trme27040g00001 87 SMART sant 13 63 IPR001005 -
Trme27040g00001 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme27040g00001 Trme-Chr27040 401 1099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme27040g00001 1 87 MYB Transcription Factor Family AT4G38620 90.805 7.77e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme27040g00001 Myb_DNA-binding 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme27040g00001 K09422 - mnt:21396280 188.734