Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme269g00002 ATGGAGAGAGAGAAAACCAGAGAGAGTGAGAGAAAATCTGAACCTTGGACCTACGTGAGTCCGAGAAGAAGGAGAGCATCTAGACGGAATCAAGACAAGACTGGCAACAAAGGAACAACCACTACGAACTCAGATGGGACAACGACATGCTACGTCAATAACCTACCGGAAGATATTGGCGAGAAAGAAGTGGAGAGAATGTTTGAAAGATGGGGGAACGTGGTTGATGTTTACATCGCAAAAAAGAGAAACAAAGCAGGGAGGGTATTCGGTTTTGTGAGATATGTAGCGGTAAAAGATGAAAGATGGCTGGAAGAGCAACTCCAAGACATTTGGTTCGGTTCATACAAGGTGTGGGTAAACATATCCAGATACGGGAGACCTCAAGAGAAGGTATTCAACAGGTATCATAACGCAGAAGAAAAGTTACAAGCACATAGAAAGAGAGAGGTAGTCAACAACCAAGCCCAACCGGTGCATCATGTTCCGGGACGACAAAGTGTAAGAATCCAAGGAAAGACATATGTTGAAGCTACACGGAACACTGGTGAAAGAAGAAACAGTCAAGCAAAGAAACATAGGGAGGAAAATCAAGGCGAGAAACAGAGGCTACAAAAAGAAGGTCAAGAAGGTGGCGACAAAGAGGGTGGAGGGATGCAAATAACTATCAAAGAAGAGGAGATGGAGTGGGCCAAAAGAGGATTCGTTGGGTTTGTTAGAAACATAGAAGAAATTTACGTGATACAACAACGATTAGAAGAAGAAGGAATAAAGTCAGTAAGAGTCATTCCTATGGGAGGTGATAGAGTGTTCATGAAAGTGGATGAGGAGGAAGACATGAGAATGCTGGTGAAGGACTCAGAACAAGTGTTTCAACAATTGTTCAGGGTAGTTAGAGAATGGGAGCCAAGGGACGTTGGAGGGCCAAGATACGTATGGGTTCAAGTGTTAGGGATACCAGCACATGCGTGGAGAATGAGTGTGTTTTCACAAATAATAATTTCTCTAGGCAGCTTGATAAAAGTGGATCAGGCAACACAAGACATGGAAAGATTAGACATGGCACGGTTGTTTATTAGAACTTCATCAATGGAGTTCATCAATAAGGTGATAAGAACCAAAATAAACAAAGAGAGCTTCATCATCAGAATAACAGAAGAATTATGTGAATGTTCTTGTATGAGCGAGCTGCTTGATCTGGTGGAAAGCCCTGAAAAGGAAGACGAAGAGTCGGTGAATTCAGATGATACTTGCATCCCTGCATCTGTAGCTTCATTGGAAGATGAAGAGACAATGAAAAGAATAGAAAATAATTATGAGAATTTAATACTGGAGGCGGATAAGGCGGCGACATTGAACGAGGTGGCAGATGAACAAATTCAAAAAGAGACAGAAAAAAGTGGAGATGCACGCGAAGGTATTGGAATTGGAGAATCGCCTCGTGACCCAAGATCAACATTAAATGAGATGGGAGAGAGAATATTGGATGAAAGAGAAAAAATGGATTTTCCCTTGAAAGAAGGAGGCACTTACGGTGATGTGGGGAAAAATAATGGGGATGAGTTGTCAAAAAAAGATAATGATAACAAGGAAAAGGAAAATGGGCTGGTCTTAGAATCAAGCCCATCTAATCACATTGAAGTCCAACAAAAGGCACATGAGGAGAATAAAAAAATTAACGGGCTAGAAAATGAAAACAAAATAGGCCCAGCAACATTGGAAACAAATCATCAAAGATCAACACCAAGCACAACACAGGATGATGAAGCCAGCATCGCAACTGATGGGGAAAATGTAGGAACAATAAAATTCAACGAAAATAGTCCAAAAAGGAGCAAAGCAAGGGATCCCAGCAATCAAGGGAAAGGAGAGAATAAAAATGAAGACTCATCACATAAGGGAACAAAAAGATTAAGAACAGATCCAGAAGAGCCAGCACAATCACCTAAGGATCGACGTAAGAGGAGAGTCGAGATTCTAAGAGAAAAGAAGAAAGCGCAGAGAAAAGGAAAAAAAACACTATCTCAATGTTCGTGCAGACATCGAAGAAAAAATAAAAAGTACGAGAAAGGTACAGTAGAGATTCTTGTAACAGAGAATGAGACAGAAAAGAGAAATTGGGTTCTAGTCCATGGGGAGGCCAAAGAAGTTGCTAGAGATGTGTGGGATATTGGAAAAGATTTTGGACTTGTGCATAAAGGCGAGGAAGGTGAAATACTACAAGAATTGATAACTGAGGTGCAGGGGGCAGGAGGGGATCTCCGGTGA 2268 0.414 MEREKTRESERKSEPWTYVSPRRRRASRRNQDKTGNKGTTTTNSDGTTTCYVNNLPEDIGEKEVERMFERWGNVVDVYIAKKRNKAGRVFGFVRYVAVKDERWLEEQLQDIWFGSYKVWVNISRYGRPQEKVFNRYHNAEEKLQAHRKREVVNNQAQPVHHVPGRQSVRIQGKTYVEATRNTGERRNSQAKKHREENQGEKQRLQKEGQEGGDKEGGGMQITIKEEEMEWAKRGFVGFVRNIEEIYVIQQRLEEEGIKSVRVIPMGGDRVFMKVDEEEDMRMLVKDSEQVFQQLFRVVREWEPRDVGGPRYVWVQVLGIPAHAWRMSVFSQIIISLGSLIKVDQATQDMERLDMARLFIRTSSMEFINKVIRTKINKESFIIRITEELCECSCMSELLDLVESPEKEDEESVNSDDTCIPASVASLEDEETMKRIENNYENLILEADKAATLNEVADEQIQKETEKSGDAREGIGIGESPRDPRSTLNEMGERILDEREKMDFPLKEGGTYGDVGKNNGDELSKKDNDNKEKENGLVLESSPSNHIEVQQKAHEENKKINGLENENKIGPATLETNHQRSTPSTTQDDEASIATDGENVGTIKFNENSPKRSKARDPSNQGKGENKNEDSSHKGTKRLRTDPEEPAQSPKDRRKRRVEILREKKKAQRKGKKTLSQCSCRHRRKNKKYEKGTVEILVTENETEKRNWVLVHGEAKEVARDVWDIGKDFGLVHKGEEGEILQELITEVQGAGGDLR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme269g00002 755 MobiDBLite consensus disorder prediction 608 656 - -
Trme269g00002 755 Coils Coil 187 210 - -
Trme269g00002 755 MobiDBLite consensus disorder prediction 1 49 - -
Trme269g00002 755 MobiDBLite consensus disorder prediction 459 478 - -
Trme269g00002 755 Coils Coil 425 452 - -
Trme269g00002 755 SMART rrm1_1 49 121 IPR000504 GO:0003723
Trme269g00002 755 Coils Coil 545 565 - -
Trme269g00002 755 MobiDBLite consensus disorder prediction 569 607 - -
Trme269g00002 755 MobiDBLite consensus disorder prediction 657 685 - -
Trme269g00002 755 MobiDBLite consensus disorder prediction 154 218 - -
Trme269g00002 755 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 125 IPR000504 GO:0003723
Trme269g00002 755 MobiDBLite consensus disorder prediction 459 685 - -
Trme269g00002 755 CDD RRM_SF 51 118 - -
Trme269g00002 755 Pfam Domain of unknown function (DUF4283) 258 357 IPR025558 -
Trme269g00002 755 MobiDBLite consensus disorder prediction 485 506 - -
Trme269g00002 755 MobiDBLite consensus disorder prediction 184 218 - -
Trme269g00002 755 PANTHER DUF4283 DOMAIN PROTEIN 204 414 - -
Trme269g00002 755 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 97 IPR000504 GO:0003723
Trme269g00002 755 Coils Coil 129 149 - -
Trme269g00002 755 MobiDBLite consensus disorder prediction 548 562 - -
Trme269g00002 755 MobiDBLite consensus disorder prediction 33 49 - -
Trme269g00002 755 Gene3D - 1 132 IPR012677 -
Trme269g00002 755 SUPERFAMILY RNA-binding domain, RBD 33 134 IPR035979 GO:0003676
Trme269g00002 755 MobiDBLite consensus disorder prediction 1 21 - -
Trme269g00002 755 MobiDBLite consensus disorder prediction 518 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme269g00002 Trme-Chr269 2594 4861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme269g00002 48 131 Eukaryotic Initiation Factors Gene Family AT1G71770 29.762 1.45e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme269g00002 - - vvo:131661586 575.859