Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26962g00001 ATGTATGCATCAATTGCTGTTTCTCGAGATCATAAGCCAGACCAAACAGATGAGAGGCAAAGGATTGAAGATGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGGCTTTTGAAGCAGTATGTTGTCGCGGATCCAGAAATCCAGGAAGAAAAAGTTGACAGYTCTCTTGAGTTTCTTATTCTGGCCAGTGATGGGCTATGGGATGTCGTCACAAATGAGGAAGCTGTTGCTATGATTAAACCGATTGGAGATGCAGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCATATCAGAGAG 343 0.449 MYASIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVTNEEAVAMIKPIGDAEEAAKRLMQEAYQR 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26962g00001 114 PANTHER PROTEIN PHOSPHATASE 5 113 IPR015655 GO:0004722|GO:0006470
Trme26962g00001 114 SUPERFAMILY PP2C-like 5 113 IPR036457 -
Trme26962g00001 114 Gene3D - 3 114 IPR036457 -
Trme26962g00001 114 CDD PP2Cc 5 114 IPR001932 -
Trme26962g00001 114 ProSiteProfiles PPM-type phosphatase domain profile. 1 114 IPR001932 -
Trme26962g00001 114 SMART PP2C_4 2 112 IPR001932 -
Trme26962g00001 114 Pfam Protein phosphatase 2C 6 113 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26962g00001 Trme-Chr26962 32 1157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26962g00001 4 114 PP2C-type Phosphatase Gene Family AT4G31750 91.892 2.64e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26962g00001 K17506 - vvi:100251928 215.312