Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26952g00001 GGAGATTTTCAAACGGTGCAAGAAGCAATCGACGCCGTACCTTTCGGTAACACACGACGGACTGTGATTCGGGTTTCTCCGGGAATCTACCGGCAACCGGTTTACGTTGCTAAAACCAAGAATTTCATCACTCTTGCTGGGTTGGGTCCTGAGGATACTGTGCTTACTTGGAATAACACTGCCACCAAAATCGAACACCATCAAGACTGTATCAATCTAGTCCCTTACTTATCATCAATATTCCAAAATAATAGCTGA 258 0.4457 GDFQTVQEAIDAVPFGNTRRTVIRVSPGIYRQPVYVAKTKNFITLAGLGPEDTVLTWNNTATKIEHHQDCINLVPYLSSIFQNNS 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26952g00001 85 Gene3D - 1 83 IPR012334 -
Trme26952g00001 85 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 65 - -
Trme26952g00001 85 Pfam Pectinesterase 1 60 IPR000070 GO:0030599|GO:0042545
Trme26952g00001 85 SUPERFAMILY Pectin lyase-like 1 61 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26952g00001 Trme-Chr26952 1 723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26952g00001 1 63 Carbohydrate Esterase AT1G69940 42.857 9.65e-13 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26952g00001 K01051 - ini:109174344 126.716