Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26895g00001 ATGCAGATCTTCAGGGGGTTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGGGACTTGAAGCCTCAAAATATACTGGTTGATCCTCTTTCACATCAAGTTAAGCTATGTGATTTTGGAAGTGCAAAAATGCTGGTCAAGGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGAGCTCCAGAACTTATATTTGGTGCTACAGAGTATACTACCTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCACTATTCCCTGGTGAAAATGCAGTGGACCAGCTCGTACATATTATAAAGGTGCTTGGAACACCCACCCGGGAGGAAGTACGCTGCATGAATCCCAATTACAATGACTTCAGGTTTCCCCAAATAAAAGCACACCCATGGCACAAGATCTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCCCGGCTTTTGCAGTACTCCCCAAGTCTTCGTTGCACTGCG 510 0.449 MQIFRGLAYIHTVPGVCHRDLKPQNILVDPLSHQVKLCDFGSAKMLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTA 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26895g00001 170 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 170 - -
Trme26895g00001 170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Trme26895g00001 170 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26895g00001 170 Gene3D Transferase(Phosphotransferase) domain 1 1 170 - -
Trme26895g00001 170 SUPERFAMILY Protein kinase-like (PK-like) 2 170 IPR011009 -
Trme26895g00001 170 FunFam Shaggy-related protein kinase kappa 1 170 - -
Trme26895g00001 170 SMART serkin_6 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26895g00001 170 CDD STKc_GSK3 2 170 IPR039192 -
Trme26895g00001 170 Pfam Protein kinase domain 2 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26895g00001 Trme-Chr26895 125 1183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26895g00001 2 170 MAP Kinase Gene Family AT3G59790 40.462 1.24e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trme26895g00001 Pkinase 8.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26895g00001 K14502 - gmx:100779448 347.051