Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26885g00001 ATGTCTGCAATGATCTCAGCTTTGACTCATATTGTCTCTGGAGATGTTCCAGTCACAAACGGTGGTGATAATAATATTCATTATAATGCAATTGAAGAAAGGCTTGGTTTTACACCAAACATTAACATGTCTTCTTCTTCTTCTTCTTCATCTAATTATGTTACTAGTTCTTCTCTCAAGAGAACTAGGGAAGAAGATGATAGATCCTTTGGTGATCAATTCTTGCTCCATGGTGGTTATTACTCCCCTGCTTTGCCAACAACAAATGCAGAAAGTTCAAGAAATAGGACAACAACCACAACGAGAGTAACAACAACAAGAGAAATGGGAAATGCAGTGTATGAATATAAAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGAAAAGAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGTACATTTGAAACTGCTGAAGCAGCTGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTAGAGGCAACAAAGCTAAACTCAATTTCCCTGAAAATGTTACTCTTCGTCACCCTCCAACAACTAGTAGTACTAATCAATGGAATGTTTCGAATTCGAATCCGCCAAATTCGATTGTTTCTATTACAACTTCAACTGATCCTGTTGTTCATACTAGGCCTTTTACTTCTTCT 705 0.3816 MSAMISALTHIVSGDVPVTNGGDNNIHYNAIEERLGFTPNINMSSSSSSSSNYVTSSSLKRTREEDDRSFGDQFLLHGGYYSPALPTTNAESSRNRTTTTTRVTTTREMGNAVYEYKRTENVVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPTTSSTNQWNVSNSNPPNSIVSITTSTDPVVHTRPFTSS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26885g00001 235 Pfam AP2 domain 131 180 IPR001471 GO:0003700|GO:0006355
Trme26885g00001 235 PANTHER DNA-BINDING DOMAIN 64 200 IPR044808 GO:0003700|GO:0009873
Trme26885g00001 235 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Trme26885g00001 235 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Trme26885g00001 235 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Trme26885g00001 235 FunFam Ethylene-responsive transcription factor 2 130 189 - -
Trme26885g00001 235 CDD AP2 131 190 IPR001471 GO:0003700|GO:0006355
Trme26885g00001 235 Gene3D AP2/ERF domain 130 190 IPR036955 GO:0003700|GO:0006355
Trme26885g00001 235 MobiDBLite consensus disorder prediction 42 58 - -
Trme26885g00001 235 SUPERFAMILY DNA-binding domain 131 190 IPR016177 GO:0003677
Trme26885g00001 235 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Trme26885g00001 235 MobiDBLite consensus disorder prediction 42 67 - -
Trme26885g00001 235 MobiDBLite consensus disorder prediction 193 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26885g00001 Trme-Chr26885 13 1227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26885g00001 129 204 AP2-EREBP Transcription Factor Family AT5G61890 77.632 6.78e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme26885g00001 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26885g00001 - - vvo:131639362 269.626