Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26775g00001 ATGTTGGAAGGTGAGGTACCAACAGTCGGTGTTTTTGGAAATGCAACCCAAGTAGCAATGATTGGAAACAATAAGCTTTGTGGAGGTATTTCAGAGTTGCATCTACCACCATGCCCTACCAAGCNTAGGAAACACGCAAAAAACCATAATTTCAAGTTGATAACGATGATAGTTAGCGTGGTTTCTTTTATTCTCATACTTTCATTTATTCTACTTATCTACTGGATGGGGAAGAGTAACAAAAAACCATTTATTGATTCACCAACAATTGATCAACTAGCTAAAGTTTCATACCAAGACTTACACCGAGGAACTGATGGGTTCTCGGATAGGAACTTGATCGGAGCAGGAAGTTTTGGTTCTGTGTATAGAGGAAATCTTCTGTCAGAAGATAGTCTTGTTGCCGTAAAGGTCTTGAACCTCCAAAAAAAGGGAGCTCACAAGAGTTTCATTGTTGAATGTAATGCACTCAAAAATATTAGACACCGGAATTTGGTTAAGATTTTAACATGTTGTTCTAGTACAGATTATAAAGGTCAAGAATTTAAAGCTTTAGTATTTGATTACATGAAAAATGGAAGCTTAGACCAATGGTTACATACTGAGATTTTAAATGCAGAGCCTCCAATAAAATTGGACCTCAATCAGAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCAAGAATGTGAGCAATTAGTCCTTCATTGTGATTTAAAGTCAAACAATGTCCTTCTTGATGATGACTTGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGTCATTGGAGATACCTCTCATAAAGATACTATTACAATTGGAAGAAGAGGGTCTCTTGGTTATGCTCCTCCTG 880 0.367 MLEGEVPTVGVFGNATQVAMIGNNKLCGGISELHLPPCPTKXRKHAKNHNFKLITMIVSVVSFILILSFILLIYWMGKSNKKPFIDSPTIDQLAKVSYQDLHRGTDGFSDRNLIGAGSFGSVYRGNLLSEDSLVAVKVLNLQKKGAHKSFIVECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFDYMKNGSLDQWLHTEILNAEPPIKLDLNQRLNIIIDVASALHYLHQECEQLVLHCDLKSNNVLLDDDLVAHVSDFGIARLVSVIGDTSHKDTITIGRRGSLGYAPP 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26775g00001 293 ProSiteProfiles Protein kinase domain profile. 108 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26775g00001 293 Pfam Protein tyrosine and serine/threonine kinase 112 269 IPR001245 GO:0004672|GO:0006468
Trme26775g00001 293 Gene3D Phosphorylase Kinase; domain 1 89 189 - -
Trme26775g00001 293 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Trme26775g00001 293 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Trme26775g00001 293 Gene3D Transferase(Phosphotransferase) domain 1 190 293 - -
Trme26775g00001 293 PANTHER OS04G0122200 PROTEIN 2 292 - -
Trme26775g00001 293 SMART serkin_6 108 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26775g00001 293 SUPERFAMILY Protein kinase-like (PK-like) 81 293 IPR011009 -
Trme26775g00001 293 FunFam LRR receptor-like serine/threonine-protein kinase EFR 79 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26775g00001 Trme-Chr26775 111 990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26775g00001 2 293 Receptor kinase-like Gene Family AT3G47570 48.845 1.54e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme26775g00001 PK_Tyr_Ser-Thr 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26775g00001 - - mtr:11411980 438.728