Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme267406g00001 ATGGTTGTTGCAGTGAAGAAACTTCATTCAGGAATAGATGGGGAGAGACCCAATTTCAAAGCATTTGAAAATGAAATTCAAGCTTTGACAGAAATCAGGCATCGTAACATCATAAAGCTCTATGGATATTGCCAACATTCAAGATTCTCATTTTTGGTTTATAAGTTCTTGGAAGGGGGAACTTTGACAAAAATTCTAAACAATGACTCGCAAGCCGTTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCTAATGCTTTGTCCTATATGCATCATGATTGCACACCTCCAATAGTTCATCGTGA 317 0.3785 MVVAVKKLHSGIDGERPNFKAFENEIQALTEIRHRNIIKLYGYCQHSRFSFLVYKFLEGGTLTKILNNDSQAVAFDWEKRVNVVKGVANALSYMHHDCTPPIVHR 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme267406g00001 105 PANTHER LEUCINE RICH REPEAT KINASE 2 2 105 - -
Trme267406g00001 105 Pfam Protein tyrosine and serine/threonine kinase 2 105 IPR001245 GO:0004672|GO:0006468
Trme267406g00001 105 Gene3D Transferase(Phosphotransferase) domain 1 1 105 - -
Trme267406g00001 105 SUPERFAMILY Protein kinase-like (PK-like) 2 105 IPR011009 -
Trme267406g00001 105 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme267406g00001 Trme-Chr267406 1 317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme267406g00001 2 105 Receptor kinase-like Gene Family AT4G08850 57.944 4.48e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme267406g00001 PK_Tyr_Ser-Thr 6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme267406g00001 - - gmx:100812486 187.193