Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme267228g00001 ATGTCATGTTTTCTTGTAGTGGAATTGGCCCAGTTCTTTTCACCAGACAACCCGCAACTTTTCAAAGTCGTACACAAAGTGTTCGGAAGGAGCACTGTGTCCAAGCTGTTGCGAAAAATAGACTCTACACAACGCAAAAAAGCAGTTGATTCATTGGTGTATGAGGTTGAGGCTCGTCTGAGGAACCATGTTAATGATTTTATGGATTTTGTTCACAATCTTGAACATAGGTTGAAGGAAGTTCAACAGAAAATCGATAATTTGAAGAGTGAACAGACCAAATACCTCAGTCCTGAG 297 0.404 MSCFLVVELAQFFSPDNPQLFKVVHKVFGRSTVSKLLRKIDSTQRKKAVDSLVYEVEARLRNHVNDFMDFVHNLEHRLKEVQQKIDNLKSEQTKYLSPE 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme267228g00001 99 Coils Coil 71 91 - -
Trme267228g00001 99 ProSiteProfiles LOB domain profile. 1 92 IPR004883 -
Trme267228g00001 99 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 96 - -
Trme267228g00001 99 Pfam Lateral organ boundaries (LOB) domain 9 89 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme267228g00001 Trme-Chr267228 32 328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme267228g00001 3 99 AS2 family AT5G66870 46.392 8.10e-25 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme267228g00001 LOB 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme267228g00001 - - vvo:131607884 100.523