Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26683g00001 ATGTACACTGGTAATTATGATCAATATGTTCAGACTCGTGGTGACTTAGAAGAGAACCAGATGAAGCAGTACAAGTGGGAACAAGAGCAGATTGCCAACATGAAGGAATATATTGCTCGATTTGGTCATGGTTCAGCAAAACTAGCTCGCCAGGCACAAAGTAAGGAAAAAACACTGGCAAAAATGGAACGAGGTGGACTTACCGAGAAGGTAGTTAGAGATCAAGTTTTAGTATTCCGCTTTACTGATGTGGGAAAACTTCCCCCTCCTGTTCTACAGTTTTCTGAAGTAAGTTTTGGTTACACTCCTGATAATCTCATCTACAAAAACATTGATTTTGGGGTTGACTTAGACTCTAGGATTGCTCTGGTTGGACCAAATGGTGCCGGAAAGAGCACACTGCTGAAGCTAATGACAGGTGATTTGTTTCCTAGTGATGGCATGGTCAAGCGTCATAATCATCTTAGAATTGCACAATATCATCAGCACTTGGCTGAAAAGTTAGACTTAGATGTTCCTGCTCTTCAGTTTATGATGAATGAATACCCTGGAAATGAGGAAGAGAAGATGAGGGCTGCTATTGGGAGGTTTGGGCTGACAGGTAAAGCCCAGGTGATGCCTATGAAGAATTTGTCTGATGGGCAAAAGAGTCGAGTGATATTTGCTTGGTTAGCTTGGAGGCAGCCTCAATTGCTACTTTTGGATGAGCCAACTAATCATTTGGATATCGAAACAATTGACTCACTGGCTGAGGCATTGAATGAGTGGGATGGTGGCTTGGTGCTTGTTAGTCACGATTTTAGGCTCATTAATCAGGTGGCACATGAAATATGGGTATGTGCTGATCAAAAAGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGAAGCATCTAAAGGCAAAGGCAGGGATAGTGGACTGA 924 0.4264 MYTGNYDQYVQTRGDLEENQMKQYKWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDQVLVFRFTDVGKLPPPVLQFSEVSFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPSDGMVKRHNHLRIAQYHQHLAEKLDLDVPALQFMMNEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQKSRVIFAWLAWRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQKVTRWEGDIMDFKKHLKAKAGIVD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26683g00001 307 SMART AAA_5 117 283 IPR003593 GO:0016887
Trme26683g00001 307 CDD ABCF_EF-3 92 284 - -
Trme26683g00001 307 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 2 302 - -
Trme26683g00001 307 Pfam ABC transporter 1 68 IPR032781 -
Trme26683g00001 307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 287 IPR027417 -
Trme26683g00001 307 FunFam ATP-binding cassette sub-family F member 3 52 305 - -
Trme26683g00001 307 Pfam ABC transporter 108 239 IPR003439 GO:0005524
Trme26683g00001 307 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 92 307 IPR003439 GO:0005524
Trme26683g00001 307 Gene3D - 51 304 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26683g00001 Trme-Chr26683 46 969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26683g00001 92 285 Calmodulin-binding Proteins AT2G36910 26.106 1.37e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26683g00001 K06185 - rvl:131314949 582.408