Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26682g00001 ATGATGATGACTCCGAATTTGAACCTTGAAGCCGAAAATAGTTTAGAAGTTAGCAGTCAAGTAGGTTCCAATGATCTTACCAAAGACAGTGCAACCACTTCTTCATGTCTTACAAATCTCACTAAGCCTGAAATTAATCTAGGTTCTATTTCCCTTAACTTGACTCTCAACTTCGATCCGAGCGATGAAGATTTGAAGGAAACAAGTGACACTAACAGTGAAGTAGTAGGAGCTGATCATGCTCATAATACTACTACTTCAGCGGCACCGATTCATAGAGTTTTCTCTTGTAATTATTGTAAGAGGAAATTCTTTAGCTCACAAGCATTAGGTGGACATCAGAATGCTCATAAACGAGAGAGGACGATGGCAAAACGCGCTATGCGAATTGGAATGTTCACCGAAAGGTATACGAGCTTAGCTTCTTTACCTCTTCATGGTTCTTCTTCTTTTCATTCTCTTGGTATTCAAGCTCATTCTGCAATGCATCAACAATACATGCCATCGTCTTCGTTGTCAATGAGGGCTCATGATATGAGAGCTACAGCAAAATTCGAGAAAGATTGTTTCGGAGGAGCACCGATGTTTATGCATNATGATGATGTTGGTATATTTTGGCCTGGAAGTTTCAGGCAGATAGATCAAAGTGTTGATGCTCACAATTCAAATTTGAATACTAATTTTGTTGTAGCAACAGAACCTCCTCAACAAAAATCTACAGCTCCTGATCTCACTCTGAGGCTTTAA 747 0.3936 MMMTPNLNLEAENSLEVSSQVGSNDLTKDSATTSSCLTNLTKPEINLGSISLNLTLNFDPSDEDLKETSDTNSEVVGADHAHNTTTSAAPIHRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRIGMFTERYTSLASLPLHGSSSFHSLGIQAHSAMHQQYMPSSSLSMRAHDMRATAKFEKDCFGGAPMFMHXDDVGIFWPGSFRQIDQSVDAHNSNLNTNFVVATEPPQQKSTAPDLTLRL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26682g00001 248 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Trme26682g00001 248 MobiDBLite consensus disorder prediction 61 81 - -
Trme26682g00001 248 Gene3D Classic Zinc Finger 69 141 - -
Trme26682g00001 248 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Trme26682g00001 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 50 175 IPR044246 GO:0009788
Trme26682g00001 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Trme26682g00001 248 MobiDBLite consensus disorder prediction 1 30 - -
Trme26682g00001 248 FunFam Zinc finger protein 2 70 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26682g00001 Trme-Chr26682 72 818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26682g00001 93 248 C2H2 Transcription Factor Family AT1G66140 45.304 7.96e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme26682g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26682g00001 - - psat:127096958 362.844