Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26665g00001 GCTCCAGGTTGCAGTGCTTCAACACTAACATCCGGTGGATGTGGGAGTGCAACCAAAATCGGTGTTGTTGTCGCAGTGGTCGTAACCGGAGTTGTGATCGTGGCTGCTCTCATTATTYTATGCTTCTGTGTCAGGCGACGTTTTACTTGGTTGAGAAAACATACCAGAGTAAAGCGCCTACTACGTGAAGCTGCCGGAAACTCTATTGTGCCTCTCTACTCGTACAAAGACATAGAAAAAGCCACAAATTCTTTCTCTGATAAACAGAGGCTGGGAACCGGGGCATTCGGTACAGTCTATTCCGGAAAACTTCACAATGATGAGTTTGTTGCAATAAAGAAGATAAGGCATAGAGATACAAACAGTGTTGATCAAGTCATGAATGAGATCAAGCTCCTTTCTTCGGTGAGTCACCCAAATTTGGTTCGCCTCCTAGGTTGCTGCATCGAAGAGGGAGAGCAGATACTTGTTTATGAATATATGCCAAATGGAACGTTGTCTGAGCATTTGCAAAGAGAGAGAGGTAAAGGTCTACCGTGGACAATACGACTCACCATTGCCTCCGAAACCGCTAATGCTATAGCTTATCTCCATTCTTCAATTCATCCCCCAATTTACCACAGAGATATAAAATCCAGTAATATACTATTGGATTATAACTACAAATCGAAAGTAGCTGATTTTGGACTTTCTAGGCTTGGCATGATAGAGACATCACATATTTCAACTGCTCCGCAGGGTACTCCAGGCTATGTCGATCCTCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTATACAGCTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTGCCAGACCTCAAAGTGAGGTTAATTTAGCTGCACTTGCTGTTGATAGGATTAGGAGGGGTTCTATAGATGAGATTGTAGATCCCTTCCTTGAACCAAATAGAGATGCTTGGACTCTATATTCCATTAATAAGGTGGCTGAGCTTGCATTTAGATGTCTTGCTTTTCATAGTGAC 1035 0.4242 APGCSASTLTSGGCGSATKIGVVVAVVVTGVVIVAALIILCFCVRRRFTWLRKHTRVKRLLREAAGNSIVPLYSYKDIEKATNSFSDKQRLGTGAFGTVYSGKLHNDEFVAIKKIRHRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSEHLQRERGKGLPWTIRLTIASETANAIAYLHSSIHPPIYHRDIKSSNILLDYNYKSKVADFGLSRLGMIETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPQSEVNLAALAVDRIRRGSIDEIVDPFLEPNRDAWTLYSINKVAELAFRCLAFHSD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26665g00001 345 Gene3D Phosphorylase Kinase; domain 1 48 160 - -
Trme26665g00001 345 ProSiteProfiles Protein kinase domain profile. 85 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26665g00001 345 FunFam Wall-associated receptor kinase-like 20 161 345 - -
Trme26665g00001 345 Gene3D Transferase(Phosphotransferase) domain 1 161 345 - -
Trme26665g00001 345 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 26 342 IPR044652 GO:0004672
Trme26665g00001 345 SMART serkin_6 85 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26665g00001 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Trme26665g00001 345 SUPERFAMILY Protein kinase-like (PK-like) 66 342 IPR011009 -
Trme26665g00001 345 Pfam Protein kinase domain 86 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26665g00001 345 FunFam Wall-associated receptor kinase-like 14 52 160 - -
Trme26665g00001 345 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26665g00001 Trme-Chr26665 2 1231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26665g00001 2 345 Receptor kinase-like Gene Family AT2G23450 71.802 1.52e-176 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme26665g00001 Pkinase 4.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26665g00001 - - vum:124829194 591.267