Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26598g00001 GCTGGTGCTTTGATGCTTGCTGACAATGGCNTTTGCTGCATTGATGAATTTGACAAGATGGATATAAGAGATCAGGTTGCAATTCACGAGGCTATGGAACAACAAACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTCAATGCTCGTACTTCCATTCTTGCTGCTGCCAACCCTGCTGGAGGACGTTACGATAGGTCTAAACCACTGAAGTACAATGTGGCTCTTCCACCAGCTATACTTTCAAGGTTCGATCTTGTATACATTATGATTGATGACCCAGACGATGTTACAGATTACCACATAGCTTCTCATATTGTGCGAGTTCATCAAAAGCGCGAAGAAGCTCTTGCTCCAACGTTCACTACAGCAGAACTGAAGCGTTATATAGGCTATGCAAAAACTCTTAAACCAAAGGTTTGA 426 0.4202 AGALMLADNGXCCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDRSKPLKYNVALPPAILSRFDLVYIMIDDPDDVTDYHIASHIVRVHQKREEALAPTFTTAELKRYIGYAKTLKPKV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26598g00001 141 ProSiteProfiles MCM family domain profile. 1 107 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme26598g00001 141 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 1 140 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme26598g00001 141 Gene3D - 1 141 IPR027417 -
Trme26598g00001 141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 133 IPR027417 -
Trme26598g00001 141 SMART mcm 1 141 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme26598g00001 141 Pfam MCM P-loop domain 1 111 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme26598g00001 141 PRINTS Mini-chromosome maintenance (MCM) protein family signature 81 89 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme26598g00001 141 PRINTS Mini-chromosome maintenance (MCM) protein family signature 2 16 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme26598g00001 141 PRINTS Mini-chromosome maintenance (MCM) protein family signature 54 66 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme26598g00001 141 PRINTS Mini-chromosome maintenance (MCM) protein family signature 30 43 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26598g00001 Trme-Chr26598 641 1226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26598g00001 1 141 Core DNA Replication Machinery Family AT5G44635 88.652 2.72e-86 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26598g00001 K02542 - csav:115697859 268.855