Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26587g00001 ATGGCAGCCGGAGCTGTCGACAATATAGTCGAAGTACTCGAATCGGGAAAAACAATGGAAGCAAGAGAAAATGCTGCAGCAGCAATATATAGCTTATCAATGTTAGATGATTGTAAAGTGCAAATTGGAGCAAGTTCAAAAGCAATACCTGCATTAGTGTTACTTCTAAAAGAAGGTACACCAATTGGTAAAAGAGATGCTGCTATTGCATTGTTTAATCTTGCAGTTTATAATCCTAATAAGTTAAGTATTGTTAAAAGCGGAGCAGTTAATTTGCTTGTTGAGTTGTTGATGGATGATAAAGCCGGTATAACGGACGATTCATTGGCGGTGTTGGCCGTGTTATTAGGTTGTTCACAAGGGTTAGAAGAGATAAAAAATTGTAAAAGTTTGGTGCCTATTCTTATTGATCTTTTGAGATTTGGTTCGGTTAAAGGGAAGGAAAATTCGATAACCGTTTTACTCGGATTGTGTAAAGAAGAAGGAGAATTGGTTGCAAGGAAGTTGTTGGCAAATCCAAGGAGTATTCCATCTCTTCAAAGTTTGGCTGCTGATGGTTCTTTGAGAGCTAGAAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGGTGTTGTTCTCAACCTCAACATTCTTTGTGA 639 0.3787 MAAGAVDNIVEVLESGKTMEARENAAAAIYSLSMLDDCKVQIGASSKAIPALVLLLKEGTPIGKRDAAIALFNLAVYNPNKLSIVKSGAVNLLVELLMDDKAGITDDSLAVLAVLLGCSQGLEEIKNCKSLVPILIDLLRFGSVKGKENSITVLLGLCKEEGELVARKLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPQHSL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26587g00001 212 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 47 89 IPR000225 GO:0005515
Trme26587g00001 212 SMART arm_5 77 117 IPR000225 GO:0005515
Trme26587g00001 212 SMART arm_5 35 76 IPR000225 GO:0005515
Trme26587g00001 212 SMART arm_5 118 159 IPR000225 GO:0005515
Trme26587g00001 212 FunFam RING-type E3 ubiquitin transferase 18 205 - -
Trme26587g00001 212 SUPERFAMILY ARM repeat 3 205 IPR016024 -
Trme26587g00001 212 Gene3D - 1 212 IPR011989 -
Trme26587g00001 212 PANTHER U BOX DOMAIN-CONTAINING 2 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26587g00001 Trme-Chr26587 540 1178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26587g00001 2 211 U-box Gene Family AT2G28830 44.131 8.70e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26587g00001 - - tpra:123924117 371.703