Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme265875g00001 ATGAGAAATGTTGCTTGCTATATGAGCCATAGTTCGAGTCCAAATGTGTTTGTTCAGTATGTTCTGTACGATCACAATAATTTGATGTTCCCTCACGTTATGCTATATGCAACAGAGAATATCCCTCCAATGAGAGAGCTGAGCATTGATTATGGTGTAGCGGATGAGTGGACCGGCAAACTCTCCATAT 190 0.4105 MRNVACYMSHSSSPNVFVQYVLYDHNNLMFPHVMLYATENIPPMRELSIDYGVADEWTGKLSI 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme265875g00001 63 PANTHER G9A, ISOFORM B 1 60 IPR043550 GO:0002039|GO:0016279|GO:0042054
Trme265875g00001 63 Pfam SET domain 3 52 IPR001214 GO:0005515
Trme265875g00001 63 ProSiteProfiles SET domain profile. 1 52 IPR001214 GO:0005515
Trme265875g00001 63 Gene3D SET domain 1 63 IPR046341 -
Trme265875g00001 63 SUPERFAMILY SET domain 2 60 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme265875g00001 Trme-Chr265875 38 227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme265875g00001 3 54 Su(var)3-9 homologs AT5G04940 55.769 3.66e-15 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trme265875g00001 SET 5.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme265875g00001 - K11420 pvu:PHAVU_003G282200g 127.487