Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26482g00001 AACTCGGGATCTTCCTCCGAGGAATCGGTGATAATCGGGGAGAGTCCAGGAACGCCTTTACCTTTCACGCTTCGTCCAACGTGTTTCTCTCCTTCTTCATCTTCCTCGTTCGAGATCGAAGTTCAAAACCCTAACGTTCCTCCTTCGGAAGAAGAAGAAACTCTACTGAAGAAGCTGAAGAGCAACGAGGTTTTTGAACAAGAGCAAGGAGTGATTACTCTTAGAAGTATCACTAGGAACAGAGAAGAAGCTAGGGTTTCGCTATGTACGTCGCGGATTCTCGCGATTCTGCGTTCTCTGATTGCTTCCCGTTACGTCGTCGTTCAGGTCAACGCTATTGCTTCTTTGGTCAACCTTTCCCTTGAGAAATCGAACAAGATGAGAATTGTGCGGTCAGGATTTGTTCCGCTTCTCATTGATGTGTTGAAGGGGGGATCTAGTGAGTCGCAGGAACATGCTGCGGGTGCACTGTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCGATCGGTGTTCTCGGTGCGTTGCAGCCGCTAATGCATGCGCTGAGGTCTGATTCCGAGCGAACTCGCCATGACTCGGCGCTTGCACTCTATCATTTGACGCTAGTTCAGAGTAACAGAGTCAAGCTTGTGAAACTCGGGGTGGTTCCGACTTTGCTTTCGATGGTGATGACAGGGACAATGGCGAGTAGGGTGTTGTTGATTCTGTGCAATCTTGCTATGTCTGTGGAGGGAAGGACGGCGATGCTGGATGCCAATGCGGTGGAGTGTATGGTGAATTTGTTGAGGGGGAACGAGTTGGACTCGGAGGCGACTCGGGAGAATTGTGTGGCGGCGTTGTATGCATTGAGTCATGGAAGTTTGAGATTCAAAGGATTGGCGAAGGAAGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNGATGATGAAGATGATTCTGGGTTTGATAGTCTTTTTGAATCGAGCGGGTTGACTCGAACAAGGTACCGAGGTGCTGGAGCTAGGAACAACAACCTTGTCAATTCAACTACATTTTAG 1113 0.442 NSGSSSEESVIIGESPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVPPSEEEETLLKKLKSNEVFEQEQGVITLRSITRNREEARVSLCTSRILAILRSLIASRYVVVQVNAIASLVNLSLEKSNKMRIVRSGFVPLLIDVLKGGSSESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSDSERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVMTGTMASRVLLILCNLAMSVEGRTAMLDANAVECMVNLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDEDDSGFDSLFESSGLTRTRYRGAGARNNNLVNSTTF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26482g00001 370 Coils Coil 333 335 - -
Trme26482g00001 370 FunFam RING-type E3 ubiquitin transferase 50 306 - -
Trme26482g00001 370 Pfam Armadillo/beta-catenin-like repeat 125 161 IPR000225 GO:0005515
Trme26482g00001 370 Pfam Armadillo/beta-catenin-like repeat 163 202 IPR000225 GO:0005515
Trme26482g00001 370 SUPERFAMILY ARM repeat 53 287 IPR016024 -
Trme26482g00001 370 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 170 IPR000225 GO:0005515
Trme26482g00001 370 PANTHER U BOX DOMAIN-CONTAINING 44 286 - -
Trme26482g00001 370 SMART arm_5 243 286 IPR000225 GO:0005515
Trme26482g00001 370 SMART arm_5 122 162 IPR000225 GO:0005515
Trme26482g00001 370 SMART arm_5 163 203 IPR000225 GO:0005515
Trme26482g00001 370 SMART arm_5 81 121 IPR000225 GO:0005515
Trme26482g00001 370 MobiDBLite consensus disorder prediction 1 25 - -
Trme26482g00001 370 Gene3D - 50 298 IPR011989 -
Trme26482g00001 370 Coils Coil 295 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26482g00001 Trme-Chr26482 1 1113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26482g00001 1 370 U-box Gene Family AT5G65200 54.987 2.00e-128 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26482g00001 - - gmx:100815075 480.715