Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26451g00001 CTGAGGATCATTCACAGAGATCTAAAAACTAGCAATATATTACTAGACGCAAATTTGAAGCCAAAGATATCAGACTTTGGCTTGGCTCGAATATTTTTGGGAGACCAAATTGAGGCAAACACAAATAGAGTGGCTGGAACTTATGGCTACATATCTCCAGAGTATGCTGTCCATGGGCATTTCTCAGTGAAATCAGATGTCTTCAGTTATGGTGTGATTGTACTAGAGATTGTAAGTGGCAAAAGGAATAGGGGATTTTCAAACCTAGAACAGTGCAATAATCTTTTTGGATACGCATGGAGATTATGGACGGAAGAGAGAGCATTGGAACTATTGGATGAAGTGCTACGGGGACAATACACACCATTCGAAGTCATACGAAGCACACAGGTGGGCTTGTTATGTGTGCAACAAAGGCCCGAAGATAGACCAGACATGTCATCTGTGGTTCTTATGCTAAATGGTGAGAAACTATTGCCAGAGCCAAAG 489 0.4151 MRIIHRDLKTSNILLDANLKPKISDFGLARIFLGDQIEANTNRVAGTYGYISPEYAVHGHFSVKSDVFSYGVIVLEIVSGKRNRGFSNLEQCNNLFGYAWRLWTEERALELLDEVLRGQYTPFEVIRSTQVGLLCVQQRPEDRPDMSSVVLMLNGEKLLPEPK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26451g00001 163 Gene3D Transferase(Phosphotransferase) domain 1 1 159 - -
Trme26451g00001 163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Trme26451g00001 163 Pfam Protein tyrosine and serine/threonine kinase 2 151 IPR001245 GO:0004672|GO:0006468
Trme26451g00001 163 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 161 - -
Trme26451g00001 163 ProSiteProfiles Protein kinase domain profile. 1 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26451g00001 163 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 32 158 - -
Trme26451g00001 163 SUPERFAMILY Protein kinase-like (PK-like) 1 154 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26451g00001 Trme-Chr26451 583 1233 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26451g00001 1 163 Receptor kinase-like Gene Family AT4G05200 54.878 2.89e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme26451g00001 PK_Tyr_Ser-Thr 3.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26451g00001 - - gmx:100784066 269.626