Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2643g00001 ATGTCRATGTCATCTTCGGATGCTGAGGCTCTATTAAAGTTCAAGGGTTCATTAACAAATGCGGTGTCCCTCAGCAGTTGGGATCCATCCATAAACCCAAAACCACCTTGCACCGGAAACATTTCCAATTGGGTGGGATTGTTTTGCCTGAATGACAGGGTGTTGGGGTTACGCCTTGAGAGCATGGGGTTAACCGGAAATATGGAATTGGAATCTCTTGCTTCAATGCCGATGTTGAGGATGGTTAGCCTGATGAACAATACCTTTGTGGGTCCCTTGCCCAACATCAAGATGTTGCCCCATTTGAGGTCTATCTACTTGTCCTATAATCATTTCTCAGGACATATACCTGACGATGCATTTACGGGTATGCCTAGGTTGAGGAAAGTGTATTTGTCTAATAACGAGTTCACCGGTAAAATTCCATCCTCTCTCGCTATCTTGCCTACTCTCCTCGTCCTCAGGCTTGACGCAAACAAGTTTCAAGGTGAGATCCCCAATTTTCATCACAAGAATAATTTGAAGATTATCAACTTCTCTAACAATAACTTAGAGGGTCCCATCCCACCTAATCTAAGAACCTTTGACGCCTCCTCTTTTAGAGGAAACACACTTCTATGCGGGCCTCCTTTGACGAATAGGTGTCAATTAGGAAATCCCAAAATGCTTGTTATGAAAACTTTACTTATTGTGATGATGATAGCCTTTATAGTAGCCATTGTGGTTTCAATATTGGTCATCTCCCGCTTGAGGTCTCAAAAGAAGCAATTAAACGAAGAACATTATTCTACAACCTCAAAATTCCATACACAAGCATCTAGCAAATATGTTAAGCCTCCTGCAGTTTATGTGAAAACCAAAAGTTTGGCCGAACACTATGATCCTAGAAGTCCTAAGCCAGATCAGTACAGTCATGGTCATTCAAAAAAGGAAAAGGGGGAACAAGGAAAACTTATATTTCTCAGAAAGGATGGACTCAAATTTGATTTACAGGATTTACTAAAGGCCTCCGCTGAAATTCTAGGAAGTGCCTCATTCGGTTCATCCTACAAAGCCGTGATCTTGGACGGCCAAGCCGTGGTTGTCAAGAGGTACAAGCAAATGAACAATGTGCAAAGAGAAGAGTTCCATGAGCATATGAGAAGGCTAGGAAACCTCAGTCATCCCAATGTTCTACCTCTCATTTCTTATTATTATAGAAGAGAAGAAAAACTTTTGATCTCTTCCTTTGTTCACAATGGTTGCTTGGCCAGTCATCTTCATGGTAACCACAACTACCAGAAGCCGGGACTTGATTGGGCAACTCGTTTGAAAATCGTGAAAGGTGTAGCGAGGGGTTTGTCATATCTATATAGTGCACTCCCAAGCGTGATTGTGCCTCATGGTCATCTAAAATCTTCCAATGTACTTTTAGATGAATCCTTTGCGCCTCTGCTCACTGATTATGCGCTCAGTCCTTTGATCAATCTTGACCACGCGCAACAAATCATCATGCCTTACAAATCCCCAGAGTATGCTCAACTTGGGCGCATTACAAAGAAAACTGATGTGTGGAGTTTTGGGATTCTAATATTGGAGATTCTGACAGGTAAATTCCCAGAGAACTATATTACAGCAAGGCATAATAGTGATTCAGACTTAGCCAGTTGGGTAAATATGATGATTACCGAGAAACGCACAAGTGATGTATTTGACGTAGAGATGGGGGGAGTAGGTACTAGTAAAGCTGAATTGCTCAAACTCTTAAAGATTGGACTCGGTTGTTGTGAGGAGAATGTAGAAAGAAGGTTGGACATCAAAGAGGCTCTAGAGCAGATTGAAGACTTGAATGAGGGTCAAACAAGTACTACTGATCATACT 1860 0.4177 MSMSSSDAEALLKFKGSLTNAVSLSSWDPSINPKPPCTGNISNWVGLFCLNDRVLGLRLESMGLTGNMELESLASMPMLRMVSLMNNTFVGPLPNIKMLPHLRSIYLSYNHFSGHIPDDAFTGMPRLRKVYLSNNEFTGKIPSSLAILPTLLVLRLDANKFQGEIPNFHHKNNLKIINFSNNNLEGPIPPNLRTFDASSFRGNTLLCGPPLTNRCQLGNPKMLVMKTLLIVMMIAFIVAIVVSILVISRLRSQKKQLNEEHYSTTSKFHTQASSKYVKPPAVYVKTKSLAEHYDPRSPKPDQYSHGHSKKEKGEQGKLIFLRKDGLKFDLQDLLKASAEILGSASFGSSYKAVILDGQAVVVKRYKQMNNVQREEFHEHMRRLGNLSHPNVLPLISYYYRREEKLLISSFVHNGCLASHLHGNHNYQKPGLDWATRLKIVKGVARGLSYLYSALPSVIVPHGHLKSSNVLLDESFAPLLTDYALSPLINLDHAQQIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYITARHNSDSDLASWVNMMITEKRTSDVFDVEMGGVGTSKAELLKLLKIGLGCCEENVERRLDIKEALEQIEDLNEGQTSTTDHT 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2643g00001 620 FunFam Pollen receptor-like kinase 1 411 620 - -
Trme2643g00001 620 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 611 IPR046959 -
Trme2643g00001 620 Pfam Leucine rich repeat 100 161 IPR001611 GO:0005515
Trme2643g00001 620 SUPERFAMILY Protein kinase-like (PK-like) 339 607 IPR011009 -
Trme2643g00001 620 Gene3D Phosphorylase Kinase; domain 1 302 410 - -
Trme2643g00001 620 MobiDBLite consensus disorder prediction 290 312 - -
Trme2643g00001 620 FunFam pollen receptor-like kinase 1 304 410 - -
Trme2643g00001 620 Pfam Leucine rich repeat N-terminal domain 5 49 IPR013210 -
Trme2643g00001 620 Gene3D Ribonuclease Inhibitor 4 169 IPR032675 -
Trme2643g00001 620 Pfam Protein tyrosine and serine/threonine kinase 339 538 IPR001245 GO:0004672|GO:0006468
Trme2643g00001 620 Gene3D Transferase(Phosphotransferase) domain 1 411 620 - -
Trme2643g00001 620 Gene3D Ribonuclease Inhibitor 170 215 IPR032675 -
Trme2643g00001 620 ProSiteProfiles Protein kinase domain profile. 335 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2643g00001 620 SUPERFAMILY L domain-like 34 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2643g00001 Trme-Chr2643 613 2596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2643g00001 6 618 Receptor kinase-like Gene Family AT5G35390 47.709 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme2643g00001 PK_Tyr_Ser-Thr 2.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2643g00001 - - aprc:113854862 894.419