Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26432g00001 TGTGTTCAGCATCCTCGTGAGTTTGTTCTTGTCTTACCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGTAGCAAGTTTTGCTCCTCTTGAGTGGCTGCCACATGGGCAGAATGTAGTAGAACTATACTGTGAACAGAAGAGAAAGACATTAATTTCATACGATAAGCTGTTACTGGGAGCAGCAAGGGAAGCTGTGAGGGCCCGATGGGAAATTGATATATGTATGAAGAGCACGCCCGACAACTTAACATGTAAAGATGCATATCAAAGAGATGGGATCTTAACAAAAGCTTTGAATTCTCGCCTCAGGAGTGAAAGTTTGAAGAGGAAATTCATTTCCACTTCATTCAAATCACAAAAAATGAATGAAAATTTTGATGACAGTTGTAAAAGGGAATGTAGCATATGTCTGCGTGATTTATTCCTGTCTGCTGTTGGCTGTTCGTGTTCAGATGACAAGTTTGCGTGTCTTGATCATGTGAAACAGCTTTGTTCTTGCCCTTGGTCAGACAAAATTCTCTTCTACCGTTATGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTTCAGTCTATAAATGGGCTAAAGAGGATCTTGGTTTAACTGTGCGCTCAGTTGCCACCAAGAGATCAAAAGAAACCCCAGTAAAAGTAAATGATTCAGAAGGCTTGTTGAAAGAACCTATGTCGCGGTGGGCACAAGATGCATACAACAAGTGGAATCGGTGTAAATCGCAGGCAACACCAAATGCTTCGGAGGGGAAACAAAGAGAAAAGGCCTTCGAAGCCCAGCAGACCCCCAGTAGCACTCACAATAGTTTGTGCGTCATTCATCCAAAAAAGAACACAACTTTACTTCATTCAACAATATCAAACGAAATCAAAGCTAAAGAGAAAATGGTGGGGCACAATTCTGTTGCAACAAGCATTGGCGAAGGAAGTAATTCTGCTGGGATCAAACCTGATAGCAAGGCTATTGGGGATAAGTTCACAACTTCAAAGAAAGTAGGAGACCCAAAAGTTTCTGAAACTCCACGCTCGCGTTTCTTGTCTTTTGTACAGGAAAACATTTTGGTTGAAGTTTCGTCTAGTTCTTCAGAATCC 1137 0.4116 CVQHPREFVLVLPGAYHSGFDCGFNCSEVASFAPLEWLPHGQNVVELYCEQKRKTLISYDKLLLGAAREAVRARWEIDICMKSTPDNLTCKDAYQRDGILTKALNSRLRSESLKRKFISTSFKSQKMNENFDDSCKRECSICLRDLFLSAVGCSCSDDKFACLDHVKQLCSCPWSDKILFYRYEISELEVLHQALDGKLSSVYKWAKEDLGLTVRSVATKRSKETPVKVNDSEGLLKEPMSRWAQDAYNKWNRCKSQATPNASEGKQREKAFEAQQTPSSTHNSLCVIHPKKNTTLLHSTISNEIKAKEKMVGHNSVATSIGEGSNSAGIKPDSKAIGDKFTTSKKVGDPKVSETPRSRFLSFVQENILVEVSSSSSES 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26432g00001 379 Gene3D Cupin 1 95 - -
Trme26432g00001 379 MobiDBLite consensus disorder prediction 319 355 - -
Trme26432g00001 379 Pfam JmjC domain, hydroxylase 1 31 IPR003347 -
Trme26432g00001 379 ProSiteProfiles JmjC domain profile. 1 49 IPR003347 -
Trme26432g00001 379 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 299 - -
Trme26432g00001 379 SUPERFAMILY Clavaminate synthase-like 1 76 - -
Trme26432g00001 379 Pfam C5HC2 zinc finger 139 189 IPR004198 -
Trme26432g00001 379 MobiDBLite consensus disorder prediction 338 353 - -
Trme26432g00001 379 MobiDBLite consensus disorder prediction 255 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26432g00001 Trme-Chr26432 1 1234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26432g00001 1 214 JUMONJI Transcription Factor Family AT1G08620 56.542 1.62e-81 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme26432g00001 zf-C5HC2 8.6e-17 No_clan