Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26427g00001 ATGCAAATATTCATCAAGTCCCCGATAGGAAAGACGATCACCCTGGCAGTTAGGAGTTCAGACACGATAGTCGATGTGAAGTTGATGATTCTTGACATAGAAGACATCCCAGTGCAGCAGCAATGTCTAATCTTTGCTGGTAAACAACTAGATGACAGCCGGACCATCACTACAACAAATATTGAATTTAGTAACATTGAATTTAGTAACATTTGA 216 0.3935 MQIFIKSPIGKTITLAVRSSDTIVDVKLMILDIEDIPVQQQCLIFAGKQLDDSRTITTTNIEFSNIEFSNI 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26427g00001 71 PANTHER UBIQUITIN 1 62 - -
Trme26427g00001 71 Pfam Ubiquitin family 3 63 IPR000626 GO:0005515
Trme26427g00001 71 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trme26427g00001 71 SMART ubq_7 1 67 IPR000626 GO:0005515
Trme26427g00001 71 ProSiteProfiles Ubiquitin domain profile. 1 62 IPR000626 GO:0005515
Trme26427g00001 71 SUPERFAMILY Ubiquitin-like 1 62 IPR029071 -
Trme26427g00001 71 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trme26427g00001 71 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trme26427g00001 71 Gene3D - 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26427g00001 Trme-Chr26427 1015 1230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26427g00001 1 62 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.903 2.70e-19 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26427g00001 - K08770 vg:15613828 76.6405