Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26408g00001 ATGAGTTTACCTTATGAAAATGAATCACCAAAATGGCTTAATTCAAAAGATAGGAAACTACTTGTGACAAAAGATTTGAGATCAAAAGCTGATATAGTTGTTGCTAAAGATGGTAGTGGGAAATATAAAACTATATCTGAAGCACTTAAACANNNNNNNNATAAGAGTAAGAAGAGAACTTTGATTTATGTGAAGAAAGGGATTTACTATGAGAATGTTAGAGTAGAGAAGACAAAATGGAATGTGATGATTATTGGTGATGGTATGACTTCTTCAGTTGTATCTGGTAGGCTTAATGTTGTGGATGGTACACCAACATTTTCATCTGCAACATTTG 337 0.3175 MSLPYENESPKWLNSKDRKLLVTKDLRSKADIVVAKDGSGKYKTISEALKXXXXKSKKRTLIYVKKGIYYENVRVEKTKWNVMIIGDGMTSSVVSGRLNVVDGTPTFSSATF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26408g00001 112 Pfam Pectinesterase 31 112 IPR000070 GO:0030599|GO:0042545
Trme26408g00001 112 SUPERFAMILY Pectin lyase-like 28 112 IPR011050 -
Trme26408g00001 112 Gene3D - 26 112 IPR012334 -
Trme26408g00001 112 PANTHER PECTINESTERASE 11 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26408g00001 Trme-Chr26408 700 1036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26408g00001 18 112 Carbohydrate Esterase AT3G10710 67.368 6.50e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26408g00001 - - gmx:100811152 176.022