Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26401g00001 ATGCTGCTGCTTGGTATGAAGCAGGAACAAGTTGAAGGCACAAAGTCAACTTTAAATGGCACAATTAGTAAGTGCAATTCCAAAGGTGGATCACAGTCTGAGAATGTTGCGAAGTCGCAGGATATACCTTCTGTTGCAAACAACCTCACTCCCAAGGTGAGGAAACCGTATACCATCACTAAACAAAGGGAGAAATGGACTGATGAAGAGCATCAAAAGTTTCTCGAAGCTTTGAAATTGTATGGTCGAGGCTGGCGTCAAATTGAAG 268 0.4291 MLLLGMKQEQVEGTKSTLNGTISKCNSKGGSQSENVAKSQDIPSVANNLTPKVRKPYTITKQREKWTDEEHQKFLEALKLYGRGWRQIE 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26401g00001 89 Gene3D - 65 89 - -
Trme26401g00001 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 89 IPR017930 -
Trme26401g00001 89 SUPERFAMILY Homeodomain-like 50 88 IPR009057 -
Trme26401g00001 89 PANTHER SWI/SNF COMPLEX-RELATED 35 89 - -
Trme26401g00001 89 Pfam Myb-like DNA-binding domain 63 88 IPR001005 -
Trme26401g00001 89 ProSiteProfiles SANT domain profile. 61 89 IPR017884 -
Trme26401g00001 89 CDD SANT 65 88 IPR001005 -
Trme26401g00001 89 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 88 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26401g00001 Trme-Chr26401 24 813 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme26401g00001 Myb_DNA-binding 3.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26401g00001 - - gmx:778089 124.405