Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26397g00001 GCATACTTTCCTGGGAGAACCGACATCGAATGCTTCCATCGTTGGCAAAAGGTTTCGGATTTTGATCTTGGAAAGAGATCATGGACAAAGGAGGAGGATGAGACCTTAATTGAACTTGTAAAGAAGTATGGTTTCAAGAGATGGTCTTTTATTGCAAAATTCATACCAGGTCGTATTGGAAAGCAATGTCGTGAGAGGTGGCATAATAACCTTGATCCAGCTATAAAAAAGGACGCATGGACGGAGGAGGAGGAATCAATACTTGCTTACTATCACCGAATATATGGCAGTAAATGGGCAGAAATTGCAAGGGTTCTTCCTGGAAGGTACTTATTTGATTCTGTTATGCAGGCTTTTCGACCTGCACTCTAA 372 0.4167 AYFPGRTDIECFHRWQKVSDFDLGKRSWTKEEDETLIELVKKYGFKRWSFIAKFIPGRIGKQCRERWHNNLDPAIKKDAWTEEEESILAYYHRIYGSKWAEIARVLPGRYLFDSVMQAFRPAL 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26397g00001 123 PANTHER MYB PROTEIN-RELATED 25 109 - -
Trme26397g00001 123 SUPERFAMILY Homeodomain-like 23 110 IPR009057 -
Trme26397g00001 123 SMART sant 76 121 IPR001005 -
Trme26397g00001 123 SMART sant 24 73 IPR001005 -
Trme26397g00001 123 Pfam Myb-like DNA-binding domain 28 86 - -
Trme26397g00001 123 CDD SANT 79 109 IPR001005 -
Trme26397g00001 123 Gene3D - 79 111 - -
Trme26397g00001 123 Gene3D - 25 76 - -
Trme26397g00001 123 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 109 IPR017930 -
Trme26397g00001 123 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 75 IPR017930 -
Trme26397g00001 123 ProSiteProfiles Myb-like domain profile. 20 71 IPR001005 -
Trme26397g00001 123 ProSiteProfiles SANT domain profile. 23 65 IPR017884 -
Trme26397g00001 123 ProSiteProfiles Myb-like domain profile. 72 109 IPR001005 -
Trme26397g00001 123 CDD SANT 27 71 IPR001005 -
Trme26397g00001 123 FunFam Transcriptional activator Myb isoform A 24 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26397g00001 Trme-Chr26397 186 899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26397g00001 2 109 MYB Transcription Factor Family AT5G02320 66.667 1.57e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme26397g00001 Myb_DNA-bind_6 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26397g00001 - - psat:127120714 197.208