Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26313g00001 GTTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCGGCCATTGCAAACCTAACCAATCTTCAGCATGTAGATTTGTCATGGAATGAGCTCTCTGGTAGTCTACCAAAGGAGCTGACAAATCTTTCCAATCTCTTATCATTTAATGTGTCGTACAACCACCTTCAAGGCGAGTTACCGGTCGGTGGGTTCTTCAACACTATCTCATCTACATCTGTTACCGGTAACTCATTGTTGTGTGGTTCTGTTGTCAACCACTCCTGTCCATCGGTTCATCCGAAACCTATTGTCTTGAATCCCAACTCTTCCGCTTCCAACTCCAGCGTTTCCTCGAAATATCATCGACACAAGATCATTCTTAGTATATCTGCTCTTATTGCTATTGGTGCAGCTGCTTTTATTGCAGTTGGCGTTGTGGCTATCACTTTCCTAAATATGCGCGCCCGTTCTGCAATGGAACGTTCTGCTGCTCCATTTGCATTCTCCGGTGGTGACGACTATACAAATTCTCCGGAGAATGATCCGAACTATGGCAAACTTGTCATGTTTTCTGGTGATGCAGACTTTGCTGATGGAGCTCATAATCTCCTTAATAAAGAGAGTGAAATAGGCCGTGGTGGATTTGGAGTTGTTTATCGCACTTTCCTTCGAGACGGGCATGCTGTTGCAATCAAGAAGCTGACAGTCTCAAGTTTGATCAAGTCTCAAGACGAGTTCGAGAAGGAAGTAAAAAGGTTTGGGAAAATTCGGCACCAGAATCTTGTGGCACTCGAAGGTTATTATTGGACTTCATCGTTGCAGCTTCTCATTTATGAGTACCTATCAAGTGGTAGCTTGCACAAGCTTCTGCACGACAATAGCAACAAAAACGTCTTATCTTGGCGACAAAGGTTCAAGATTATTCTCGGCATGGCAAAAGGGTTGGCACATTTGCACGAAACAAACATAATCCACTATAATCTAAAATCAACCAATGTTCTCATCGACTGTTCCGGCGAACCAAAGATCGGTGATTTCGGCCTGGTGAAGCTCTTACCAATGCTAGACCATTGTGT 1055 0.4389 VLSHNKLTGSIPAAIANLTNLQHVDLSWNELSGSLPKELTNLSNLLSFNVSYNHLQGELPVGGFFNTISSTSVTGNSLLCGSVVNHSCPSVHPKPIVLNPNSSASNSSVSSKYHRHKIILSISALIAIGAAAFIAVGVVAITFLNMRARSAMERSAAPFAFSGGDDYTNSPENDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQDEFEKEVKRFGKIRHQNLVALEGYYWTSSLQLLIYEYLSSGSLHKLLHDNSNKNVLSWRQRFKIILGMAKGLAHLHETNIIHYNLKSTNVLIDCSGEPKIGDFGLVKLLPMLDHCV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26313g00001 352 Pfam Protein kinase domain 198 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26313g00001 352 FunFam Os07g0541700 protein 274 350 - -
Trme26313g00001 352 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 346 - -
Trme26313g00001 352 FunFam Leucine-rich repeat receptor-like protein kinase 1 90 - -
Trme26313g00001 352 SUPERFAMILY Protein kinase-like (PK-like) 195 349 IPR011009 -
Trme26313g00001 352 Gene3D Transferase(Phosphotransferase) domain 1 274 350 - -
Trme26313g00001 352 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 191 273 - -
Trme26313g00001 352 SUPERFAMILY L domain-like 2 81 - -
Trme26313g00001 352 Gene3D Ribonuclease Inhibitor 1 94 IPR032675 -
Trme26313g00001 352 ProSitePatterns Protein kinases ATP-binding region signature. 203 226 IPR017441 GO:0005524
Trme26313g00001 352 Gene3D Phosphorylase Kinase; domain 1 178 273 - -
Trme26313g00001 352 ProSiteProfiles Protein kinase domain profile. 197 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26313g00001 Trme-Chr26313 183 1237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26313g00001 2 61 Receptor kinase-like Gene Family AT3G56370 45.000 3.47e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trme26313g00001 Pkinase 1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26313g00001 - - mtr:11433630 621.698