Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme262g00001 CTTGTTAAGGGAGATGAAATTGGTCCAGCACTTGCTCAAGCAATCCAAGACTCACGCATATCTCTCATCATTTTCTCAAAAAACTATGCAAACTCAAAGTGGTGCTTGAATGAACTCCTCAAAATACTTGAATGCAGAAAATTTGATGGTCAAGTGGTGATACCTGTGTTCTACAACACAGAACCAACAGATGTACGTAAGCAGACAGGGAGTTATGGAGAAGCGTTTGCAAAATATGATGGAGATGCCATCAACAATGAATCTTTGGCAAAAAGTGTTTCTGAATGGAGAAAAGCTCTTGCTGAGGCTGCTAATATACCTGGATGGGACTCTGAAAGTCGTAACTATAAGGATGATGCTCAAGTCATTCAGAGTATTATTAATGATGTTTGGAAAAAGTTAGCCTTGATGTTTCCTAATCAACTGAAAGGCCTTGTTCATAATGATGAACACCGAGAATCTGCTGAGTCACTACTGAATAGATATCAAAAAATTGGAATTTGGGGCATGGGTGGTATAGGGAAGACAACCCTAGCTAGACAGATGTTTACCGACCACTTTGCACAGTACGACAACACTTGCTTTTTGGAAAATGTAAGTGAAGAAGTAGGAAATTCAGAATCAGGACTAAAGTGCATCCGCAATAAGCTTTTTAGTGAGCTACTAAAGAGAAAAATTACTGAATCTGATATTCTTGGAGCCACATTCATTAAGAGGATGCTCGGTGGTAGAAAAGTTTTCATTGTACTTGATGATGTGGGCAATGCTGCACAATTAGAAAAGTTGTGTGAAGAACTTGATGACCTTGGATCAGACAGTCGGCTGATTATCACGACAAGAGATAGGCACATGCTGGAGGGAAAGGTTGATAAGATATATAAGGTCACAAAATGGAACTTTGAAGAATCTCTGAGGCTTTTTAGCTTAGGAGCTTTCAAGCAAAATCATCCTAAAGATGGTTACAAACTTCTTTCGCAAAGGGCAGTGGCATATGCAGGAGGCGTTCCGTTAGCTTTAAAAGTTTTGGGTTCACATTTTTTTTCAAGAAATCTTGAATTCTGGGAATCTGAATTGAAATATTTGGAGAACAACGGGGAATCCTTGGGTGGAATTCAAGAAGTGTTACAAGTGAGCTATAATGGATTAACACCTCGAGAGAAGGAAATATTTCTTGATATTGCATTCTTTTTCAAAGGCAAACCCAGAGATTTCGCGACAAGGATACTAGATGCTTGTGGTTCCAAAGCTACTAGTGGAATAGACATCCTTGAAGATAAAGCTCTTGTCACTATTTCAAATAGAAATAATATACAAATGCATGACTTACTACAGAAAATGGCTTTCGATATAGTTCGGCAAAAGAAAGACTGCACTAGAAGAGACCTGGGAAAATGCAGCCGGTTAAGGGATATTGAAGAAATCTGTGATGTATTTAAAAATAGCAAGGGGACACATAAAGTTGAAGGAATAATGTTTGATTTGTCTAAAAAGGGAGATTTGCATGTTCGGGCTGACACATTCAACATGATGAATAACTTAAGATTTCTATGTTTCTATGTCCCTTTCGGCACAAAGAGATCAGCAATCATATATCATTCTAAAGATATGATGCCTTTTCCAGATAAATTGAGATATCTTGAGTGGAATGGATTTCCCTTGAAATCTCTTCCACATCCTTTTTGCGCCAAGCTACTTGTTGAGATTGACTTGCAGCACAGCAGTGTAGAATATCTTTGGCACGGGAGGCAGGAACTTGTAAATTTAGAGATAATCGACCTAAGTGAAAGCAAACGATTGATGGAGCTCCCTGATTTGTCTGGGACCACAAAACTGAAAAGGCTGTATCTCTCAGGTTGTGAGAGTTTACGTGAAGTTCATCTATTTAAGGACACACTTGTTACTTTGCTTGTAGATAGGTGCAAAAAGTTGGAGATTCTTGTAAGTGAGGAGCATTTAACATCTCTACAGGATATCGATTTCAGTGGCTGCTCAAGTCTTAGAGAATTTTCGTTGTCCTGGGATTCGATTGAAGAGTTGGATTTAAGCAAAACAAGCATTGAAATACTGCACTCATCCATCGGTCGTCAGAGCAAGCTTAGGAGGCTCAATTTACAAGTAACTAAATCAAAGTTGGAACCCATATTTGATGGTCTTGAATCATTGAAAACACTATATTTGAAAGATTGTGGTAACTTGCTTGAACTCCCCGCAAACATCGATTCCTTGTCATTGTTATATGATTTAAGACTAGATGGAAGCAATGTGAAGATGCTGCCTTCAAGCATTAAGAATCTTTCAAGCCTAAAAATTCTGTCCTTGAACAACTGCAAGAAGCTTGGTTTTCTTCAGGAGCTTCCTCCACACATCAAATTTCTTTCTGCCGAAAACTGCATCTCACTGGTGAGCATTTCGAGTTTGAAGACTCTTTCACAAAGTATGAAGGGAGTGAAGAAGTACATTTCATTCAAGAATAGCTTGAAGTTGAATGCACCTTCACTTGACCGCATTATGGAAGATGCTACATTAACAATGAAGAGTTCCGCATTTCACAACACTGCCATAGCTGAAGAACATGGCTACACCGGTAACGATGCTCAGGTTTGTTTACCGGGTTGCGGAGTTCCAAAGCATTTCAACTACCGAGCAATAGGTTCCTCTCCGTCCATTTCTATTGGAGCTCCTTGCCTTTCCAAATCCCTTGGCTTGATTTTATCAGTTGTTGTTTCTTCATCCGATCTAATGAAGGAGCATGATAATTGTCTTATAATCGAATGCCAATGCTATTCGAAAGATGTTGTTGCCAGTTTGATATATTCAAGGGAATCAACTCAGATAAGTTTGGTAAGACTACCATCTGAAATGTGGTGGAACTTTGGATTCTGGTTAAAGTTGCAGCGTGTTCTTTTCCACGTCGAGAACAACAATCTTGCGTCCCAAGGCCTATTTCACTGTGGTTTTCAAAAGCAGGAAACTGGAGAGTTTGTTGGTCTCTACATGCAAATAATAGCAAGAAGCAAGTATCTATAG 3027 0.3908 LVKGDEIGPALAQAIQDSRISLIIFSKNYANSKWCLNELLKILECRKFDGQVVIPVFYNTEPTDVRKQTGSYGEAFAKYDGDAINNESLAKSVSEWRKALAEAANIPGWDSESRNYKDDAQVIQSIINDVWKKLALMFPNQLKGLVHNDEHRESAESLLNRYQKIGIWGMGGIGKTTLARQMFTDHFAQYDNTCFLENVSEEVGNSESGLKCIRNKLFSELLKRKITESDILGATFIKRMLGGRKVFIVLDDVGNAAQLEKLCEELDDLGSDSRLIITTRDRHMLEGKVDKIYKVTKWNFEESLRLFSLGAFKQNHPKDGYKLLSQRAVAYAGGVPLALKVLGSHFFSRNLEFWESELKYLENNGESLGGIQEVLQVSYNGLTPREKEIFLDIAFFFKGKPRDFATRILDACGSKATSGIDILEDKALVTISNRNNIQMHDLLQKMAFDIVRQKKDCTRRDLGKCSRLRDIEEICDVFKNSKGTHKVEGIMFDLSKKGDLHVRADTFNMMNNLRFLCFYVPFGTKRSAIIYHSKDMMPFPDKLRYLEWNGFPLKSLPHPFCAKLLVEIDLQHSSVEYLWHGRQELVNLEIIDLSESKRLMELPDLSGTTKLKRLYLSGCESLREVHLFKDTLVTLLVDRCKKLEILVSEEHLTSLQDIDFSGCSSLREFSLSWDSIEELDLSKTSIEILHSSIGRQSKLRRLNLQVTKSKLEPIFDGLESLKTLYLKDCGNLLELPANIDSLSLLYDLRLDGSNVKMLPSSIKNLSSLKILSLNNCKKLGFLQELPPHIKFLSAENCISLVSISSLKTLSQSMKGVKKYISFKNSLKLNAPSLDRIMEDATLTMKSSAFHNTAIAEEHGYTGNDAQVCLPGCGVPKHFNYRAIGSSPSISIGAPCLSKSLGLILSVVVSSSDLMKEHDNCLIIECQCYSKDVVASLIYSRESTQISLVRLPSEMWWNFGFWLKLQRVLFHVENNNLASQGLFHCGFQKQETGEFVGLYMQIIARSKYL 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme262g00001 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 670 IPR044974 GO:0006952
Trme262g00001 1008 Pfam NB-ARC domain 164 373 IPR002182 GO:0043531
Trme262g00001 1008 Pfam TIR domain 2 140 IPR000157 GO:0007165
Trme262g00001 1008 SUPERFAMILY L domain-like 491 804 - -
Trme262g00001 1008 PRINTS Disease resistance protein signature 164 179 - -
Trme262g00001 1008 PRINTS Disease resistance protein signature 763 779 - -
Trme262g00001 1008 PRINTS Disease resistance protein signature 240 254 - -
Trme262g00001 1008 PRINTS Disease resistance protein signature 332 346 - -
Trme262g00001 1008 SMART till_3 1 106 IPR000157 GO:0007165
Trme262g00001 1008 Gene3D - 1 131 IPR035897 -
Trme262g00001 1008 Gene3D - 299 383 IPR042197 -
Trme262g00001 1008 ProSiteProfiles TIR domain profile. 1 134 IPR000157 GO:0007165
Trme262g00001 1008 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 109 IPR035897 -
Trme262g00001 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 393 IPR027417 -
Trme262g00001 1008 Gene3D Ribonuclease Inhibitor 674 836 IPR032675 -
Trme262g00001 1008 Gene3D Ribonuclease Inhibitor 461 673 IPR032675 -
Trme262g00001 1008 Gene3D - 132 292 IPR027417 -
Trme262g00001 1008 SUPERFAMILY "Winged helix" DNA-binding domain 371 455 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme262g00001 Trme-Chr262 474 4985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme262g00001 14 768 WRKY Transcription Factor Family AT4G12020 31.017 9.23e-77 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme262g00001 - - mtr:11419903 1263.06