Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26282g00001 GCTAATAGAAACATTCCAGGGTGTGGTCCAGGTTCATCAGCAGATAGAACTAGAACTTCGGTTGTTAGTGGTTTAGGGAAGAAACTCAAAGATATGATGGATAGTTTTCAAGGGTTGAGAGCAAAAATGCACTCCGAGTATAAGGAAACGGTGGAACGTAGATATTTTACAATAACGGGGGAGAAGGCGGATGAAGAAACTATAGATAATTTGATATCAAGTGGAGAAAGTGAAAATTTCATGCAAAAGGCAATTCAAGAACAAGGTAGGGGTCAAATAATGGATACTATTTCGGAAATTCAAGAAAGACATGATTCTGTTAAGGAAATAGAGAAGAATTTGATTGAGTTGCATCAAGTGTTTTTGGACATGGCAGCTTTGGTAGAGTCTCAAGGGCAACATCTTAATAACATAGAGAGTCATGTTGCACATGCTAGTTCTTTTGTAAGAAGAGGCACAGAACAACTTGAGGAAGCAAGAGAGACTCAAAAGAATTCTAGGAAGTGGACATGTTATGCCATACTTCTTGGTATTGTTCTTGTTATTGTGCTCTTGTTTCCTCTCTTGATGTCACTTTTACCNCATTTGTTAAGAAGATGA 600 0.3783 ANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDSFQGLRAKMHSEYKETVERRYFTITGEKADEETIDNLISSGESENFMQKAIQEQGRGQIMDTISEIQERHDSVKEIEKNLIELHQVFLDMAALVESQGQHLNNIESHVAHASSFVRRGTEQLEEARETQKNSRKWTCYAILLGIVLVIVLLFPLLMSLLPHLLRR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26282g00001 199 ProSitePatterns Syntaxin / epimorphin family signature. 103 142 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trme26282g00001 199 Gene3D - 81 189 - -
Trme26282g00001 199 PANTHER SYNTAXIN 17 182 IPR045242 -
Trme26282g00001 199 FunFam Syntaxin 132 90 190 - -
Trme26282g00001 199 CDD SNARE_syntaxin1-like 96 158 - -
Trme26282g00001 199 SMART tSNARE_6 92 159 IPR000727 -
Trme26282g00001 199 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 97 159 IPR000727 -
Trme26282g00001 199 Pfam SNARE domain 135 185 IPR000727 -
Trme26282g00001 199 Gene3D - 1 54 - -
Trme26282g00001 199 SUPERFAMILY t-snare proteins 2 152 IPR010989 GO:0016020|GO:0016192
Trme26282g00001 199 Pfam Syntaxin 4 132 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26282g00001 Trme-Chr26282 1 600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26282g00001 2 197 SNARE and Associated Proteins AT1G61290 81.633 4.26e-120 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26282g00001 K08486 - gmx:100818999 318.931