Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26233g00001 AAAGAAGAAGAATTTGACGCACAGCGTTGCATTTGCTCTGGGTGTTATAGAACTTCTAAAGGTGGGCATATCAAATTCAACGGGATATCTATTTCTAAGACACATCTTGAAAAAAAGAATAATGACGAATTACTTGAAGAAGCATGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAGTATGTGCACTCTACAACAACAAAAGAGATTTGGACCGCGAAGCTGAGTATATATGTCCTTTCTGCCGCTTAAAAGAATTTGAAAATGGAATACATGTTCCCTTACCAAAGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNAACCATGCTTAGTGACCACTTAGAGAAAAGACTTTTTGAGCGTCTCATGCAAGAGAGAGCAGACTGGAATAACGATAAAGGGAAGGAGAACCCTGACAAGGTTTTAGCAGAAGAAAGTCTTTCTATTAGAGAAGTGTTATCTGTCGACAAACAATTGAAAGTGAAGAAGCAGTTTCTGGANNNNNNNNNNANNNNNNNNTACCCTGCTGAATTCTCTTATAGATCAAGAGTTATTCTTCTGTTTCAGCAGATTGAAGGAGCAGATGTATGCATTTTTGCAATGTATGTCCAGGAGTTTGGGTCTGAATGCGCCAATCCGAATCAGCGATGTGTATACATTTCATATCTTGATTCTGTCAAGTATTTTAGGCCTGAAAGAAATGCTGCGGGTGGAGGAGCACTTCGCACCTTCGTATACCATGAGATATTGGTATTTTTCTTTTAA 771 0.3619 KEEEFDAQRCICSGCYRTSKGGHIKFNGISISKTHLEKKNNDELLEEAWVECNKCKRWQHQVCALYNNKRDLDREAEYICPFCRLKEFENGIHVPLPKXXXXXXXXXXXTMLSDHLEKRLFERLMQERADWNNDKGKENPDKVLAEESLSIREVLSVDKQLKVKKQFLXXXXXXXYPAEFSYRSRVILLFQQIEGADVCIFAMYVQEFGSECANPNQRCVYISYLDSVKYFRPERNAAGGGALRTFVYHEILVFFF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26233g00001 256 ProSiteProfiles Zinc finger PHD-type profile. 9 86 IPR019787 -
Trme26233g00001 256 SMART KAT11_2 135 256 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trme26233g00001 256 SMART PHD_3 9 84 IPR001965 -
Trme26233g00001 256 Pfam Histone acetylation protein 144 255 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trme26233g00001 256 CDD PHD_HAC_like 11 83 - -
Trme26233g00001 256 SUPERFAMILY FYVE/PHD zinc finger 46 86 IPR011011 -
Trme26233g00001 256 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 101 256 IPR031162 GO:0004402
Trme26233g00001 256 PANTHER CBP/P300-RELATED 8 254 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trme26233g00001 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 87 IPR013083 -
Trme26233g00001 256 Pfam PHD-finger 46 84 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26233g00001 Trme-Chr26233 58 1223 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme26233g00001 HAT_KAT11 8.1e-16 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26233g00001 K04498 - psat:127094503 333.954