Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26230g00001 ATGCGTCCTGTCACGATGCCACCATCTGTTGCTCCTCGCATGCCTATGTATCCCCCTGGTGGTCCTGGTATGGGTCAACAAATATTTTACGGTCAAGGCCCTCCTGCCATCATTCCTTCCCAGGCTGGATTTGGGTATCAACAACAACTTGTGCCTGGAATGAGGCCTGGTGGGGCTCCTGTGCCAAATTTCTTTGTGCCAATGATGCTCCCTAGGGGGCGTGTGTATCGCTATCCTCCTGGTAGGGGAATGCCTGACGGTCCCATGCCTGGAGTTGCTGGAGGCATGTATTCTGTTCCTTATGATGTGGGTGGGATGCCCCTTCGCGATGCATCACTTTCCCAGCAAATTCCAATTGGTGCWTTGGCTTCTCATTTGGCTAATGCATCTCCAGAGCAGCAGAGAACGATGCTGGGTGAGAATCTGTACCCCCTTGTGGAACAATTGGAGCCTGACAATGCTGCCAAAGTTACTGGCATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTTGAGTCACCAGAGGCCCTGAAAGCAAAGGTGGCAGAGGCAATGGACGTCCTTAGGAATGTTGCGCAGCAGCAGGCTGGTGGTGCTGCTGATCAGCTGTCTTCATTGTCACTCAATGACAGCCTTGCTTCTTAA 651 0.5238 MRPVTMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQAGFGYQQQLVPGMRPGGAPVPNFFVPMMLPRGRVYRYPPGRGMPDGPMPGVAGGMYSVPYDVGGMPLRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDSLAS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26230g00001 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 130 197 - -
Trme26230g00001 216 FunFam Polyadenylate-binding protein 114 196 - -
Trme26230g00001 216 Pfam Poly-adenylate binding protein, unique domain 126 190 IPR002004 GO:0003723
Trme26230g00001 216 SMART poly_2 130 193 IPR002004 GO:0003723
Trme26230g00001 216 Gene3D - 114 197 - -
Trme26230g00001 216 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 118 195 IPR002004 GO:0003723
Trme26230g00001 216 SUPERFAMILY PABC (PABP) domain 64 208 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26230g00001 Trme-Chr26230 27 1102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26230g00001 1 214 Eukaryotic Initiation Factors Gene Family AT1G49760 65.490 5.35e-99 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26230g00001 K13126 - gmx:100813735 327.02