Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2622g00001 CGGAAATCTATACCCCTCTTAGTGGACCTCTTAAGACCAATACCAGAAAGGCCTAATGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATGCAAACAAATCAATTCTGGCAGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCATTGAGCCCTCAAGACTCAACTGAGACTGCTATTACAGAGTTACTGAGAATATTATTTTGTAACTCTGACCTCATTAATCACGAAGCATCAACAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATTCTAGATATAGTGCAGCAAGGGCAATTCATGAACTCTTTGACGCCGATTATATCAGAGATTCAGAACTAGCTAAACAGGCCATTCAGCCATTGGTTGACATGCTTAACACAACATCAGGGAATGAGCAGGACGCTGCTCTCATGGCCTTGATCAAGTTAACATCAGGAGATTCGTCAAAAGCATCTGTTTTTACTGATGTGGAAGGGAATCCACTTGAAAGTTTATACAAAGTATTGTCTTCTGCTTCTTCTTTGGAACTGAAGACCCATGCCGCACATCTCTGCTATGCTCTTTTTGGTAATAGCAAGATCAGAGCAAACCCAGTTGCCTCAGAATGTCTGAAACCCCTTATATCACTAATGCAGTCTGGTTCTGAGACAGCAATAGAATACGGGGTTTGTGCTTTTGATAGATTGTTGGAAGATGAACAGCAGGTAGAGCTTGCAGCAGCCTATAATGTTGTGGATCTCCTTGTTGGCTTGGTTTCTGGTGGGAACTATCAGCTTATTGAGGCCACTATATCTGCTCTAATTAAATTGGCAAAAGACAGGACTCCTAGCAAACATGACATGGTCAAAGCTGGCATTATTGATAATTGTCTCGAGCTATTTCAATCAGCACCTAGCTCATTATGTTCCACAATTGCTGAGCTTTTTCGCATTTTAACTAATAGTGTTGCAATTGCTAGAAGTTCAGATGCTGCAGAAATCGTAGAACCCCTTTTTAATGTTTTGCTCCGTCAGGATTTCAACTTATGGGGACAGCACAGTGCCTTACAAGCACTAGTAAATATATTGGAGAAACCGCAAAGTCTTGCATCCTTAAAGCTTACTCCTAGCCAAGTCATTGAACCCTTGATTTCTTTTCTTGAATCCCCATCCCTAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGATCACTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCCCTTGTACGGCTTGCAGGAATTGGAATTTTAAATTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATTTCCACGAGCTGGCCAAAGGCCGTTGCTGATGCGGGAGGTATTTTTGAGCTTGCAAAAGTTATTATTCAAGATGATCCTCAGCCACCACATGCACTCTGGGAATCTGCTGCTTTAGTTCTCTCTAATGTCTTACGTTCCAATACTGATTACTATTTTAAAGTTCCTGTGGTGGTTCTTGTAAAACTCTTGCACTCAACACTTGAGAGTACAATTAGCATAGCGCTAAATGCTTTAATAGTTTATGAAAGAAGCTATGGTTCAAGTGCTGAAGAGATGATGGAAGCTGGAGCTTTGGATGCTCTGTTGCACCTTGTAAGATCTCATCAATGCGAAGAAGCGTCTGGTAGCTTACTTGAAACTTTATTTAACAATGTGAGAATACGGGAGATGAAGATATCTAAGTATGCTATAGCGCCTTTATCCCAATATCTGTTAGATCCACATACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCTCTGGGAAATCTTTCCCAGCATGAACGACATGCTAGAGCTAGTGACTCTGTATCTGCATGTCGTGCATTGATAAGTTTACTAGAAGATCAGCCAACTGAAGAAATGACGATGGTGGCTATATGCGCGTTACAAAACTTTGTCATGAAGAGCAAGACCAATAGACGTGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTACTGTTTCCAAATACAGAAGTTGCTGGGCAAGCAGCTCTATTGATCAAATTTTTGTTTTCTACCCACACATTACAAGAGTATGTGTCAAATGAGCTGATCAGATCTTTGACAG 2161 0.4132 RKSIPLLVDLLRPIPERPNAPPVAVRLLISIADGSDANKSILAEAGALEALNKYLSLSPQDSTETAITELLRILFCNSDLINHEASTSSLNQLIAVLRLGSRNSRYSAARAIHELFDADYIRDSELAKQAIQPLVDMLNTTSGNEQDAALMALIKLTSGDSSKASVFTDVEGNPLESLYKVLSSASSLELKTHAAHLCYALFGNSKIRANPVASECLKPLISLMQSGSETAIEYGVCAFDRLLEDEQQVELAAAYNVVDLLVGLVSGGNYQLIEATISALIKLAKDRTPSKHDMVKAGIIDNCLELFQSAPSSLCSTIAELFRILTNSVAIARSSDAAEIVEPLFNVLLRQDFNLWGQHSALQALVNILEKPQSLASLKLTPSQVIEPLISFLESPSLAIQQLGTELLSHLLAQDHFQQDITTKNAVVPLVRLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRSNTDYYFKVPVVVLVKLLHSTLESTISIALNALIVYERSYGSSAEEMMEAGALDALLHLVRSHQCEEASGSLLETLFNNVRIREMKISKYAIAPLSQYLLDPHTRSQSGKLLAALALGNLSQHERHARASDSVSACRALISLLEDQPTEEMTMVAICALQNFVMKSKTNRRAVAEAGGILVIQELLLFPNTEVAGQAALLIKFLFSTHTLQEYVSNELIRSLT 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2622g00001 720 Gene3D - 1 119 IPR011989 -
Trme2622g00001 720 SMART arm_5 575 619 IPR000225 GO:0005515
Trme2622g00001 720 SMART arm_5 663 703 IPR000225 GO:0005515
Trme2622g00001 720 SMART arm_5 287 327 IPR000225 GO:0005515
Trme2622g00001 720 SMART arm_5 118 158 IPR000225 GO:0005515
Trme2622g00001 720 SMART arm_5 245 285 IPR000225 GO:0005515
Trme2622g00001 720 SMART arm_5 204 244 IPR000225 GO:0005515
Trme2622g00001 720 SMART arm_5 35 75 IPR000225 GO:0005515
Trme2622g00001 720 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 720 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trme2622g00001 720 Gene3D - 120 501 IPR011989 -
Trme2622g00001 720 SUPERFAMILY ARM repeat 386 719 IPR016024 -
Trme2622g00001 720 Gene3D - 511 719 IPR011989 -
Trme2622g00001 720 SUPERFAMILY ARM repeat 7 374 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2622g00001 Trme-Chr2622 442 2602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2622g00001 508 683 U-box Gene Family AT2G23140 31.844 1.09e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2622g00001 - - aprc:113846793 1203.73