Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2621g00001 ATGGGGTCTGATAGAAACAAAGAGCGAGGTTTGGGCCTGCTGATACAAAATGTGGGAAACAGGGCCAATTTAGGAAGGTCTACCAGAGGAGGCGTAACAACAACAAACATAAGTGTTGCTAGATCAACAGTGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTTGCTCAAGGATTATCTGCAGTTTCACTGCATGGTGGCCGCAGTCAGAGTGAAAGAGAGGCTGCTTTGCATGACTTCCGGAGTAGCTCAACCAGCATTTTGGTTGCTACTGATGTTGCATCTCGGGGTTTGGATGTCACAGGAGTGTCACACGTCATAAATCTTGATCTTCCAAAGACCACAGAAGATTATATACACCGGATTGGAAGGACGGGGCGAGCAGGATCAACTGGCATAGCCACTTCCTTTTACACAGATCGTGACATGTTCCTTGTGACAAATATAAGGAAAGCAATAGCNGATGCTGAATCTGGGAACGCTGTGGCATTCGCTACTGGAAAGGTACTATTTCTGTTCTGTTGGGATATTCATGGTCCATTTGGTATACCCTTAAAATATGGGGTGAAAAATTAA 576 0.4514 MGSDRNKERGLGLLIQNVGNRANLGRSTRGGVTTTNISVARSTVTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVLFLFCWDIHGPFGIPLKYGVKN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2621g00001 191 Pfam Helicase conserved C-terminal domain 39 129 IPR001650 -
Trme2621g00001 191 SMART helicmild6 48 129 IPR001650 -
Trme2621g00001 191 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 39 143 - -
Trme2621g00001 191 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 10 170 IPR001650 -
Trme2621g00001 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 159 IPR027417 -
Trme2621g00001 191 CDD SF2_C_DEAD 42 138 - -
Trme2621g00001 191 Gene3D - 35 165 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2621g00001 Trme-Chr2621 300 2462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2621g00001 32 151 Eukaryotic Initiation Factors Gene Family AT3G19760 39.167 1.50e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2621g00001 K12823 - gmx:100818387 230.72