Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26213g00001 GAAGATTATAGACCAGATGAAGAAGATGAAGAAGAGGGTAATGCTGGCGACAAAAAGTCCTTTTTTGCTCCTTCTGATGGAACATCTTTCAGTGCTGATTCGTTCTTGCAACTCAATTTGTCTCGCCCTTTACTGAGGGCTTGTGCGGTCTTGGGGTTTGCTAAACCAACACCAATTCAGGCGGCTTGCATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACTGCTGCATTTGCACTACCTACTTTAGAGAGGTTGCTGTACCGTCCAAAACGCATGAATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGCCCAGTAA 360 0.4528 EDYRPDEEDEEEGNAGDKKSFFAPSDGTSFSADSFLQLNLSRPLLRACAVLGFAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRMNAIRVLILTPTRELAAQ 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26213g00001 119 Gene3D - 4 119 IPR027417 -
Trme26213g00001 119 MobiDBLite consensus disorder prediction 1 22 - -
Trme26213g00001 119 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 119 IPR014001 -
Trme26213g00001 119 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
Trme26213g00001 119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 119 IPR027417 -
Trme26213g00001 119 Pfam DEAD/DEAH box helicase 57 119 IPR011545 GO:0003676|GO:0005524
Trme26213g00001 119 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 11 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26213g00001 Trme-Chr26213 400 1099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26213g00001 5 119 Eukaryotic Initiation Factors Gene Family AT5G11200 37.391 2.28e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26213g00001 K13181 - gmx:100776684 201.445