Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26154g00001 GGGGATCTTCGTGACTATTTGAAGCATAAAGGTGCATTAAAACCAATAACAGCTGTGAAGTTTGCACTTGATATTGCTAGGGGGATGAATTATTTGCATGAACATAAACCTGAAGCCATTATACACCGAGATCTTGAGCCTTCAAATATTCTCCGGGATGATTCTGGACATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTCACTCAAAATCACTAAAACAGTCAAAGAAGACAAACCTGTGACATGCGAGGATACATCATTTCTTATTGATAAATTAGTTGAAATTCAAATGCATTACAGGGCGGTATGTTGCACCAGAGGTCTACAGAAATGA 336 0.3869 GDLRDYLKHKGALKPITAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKSLKITKTVKEDKPVTCEDTSFLIDKLVEIQMHYRAVCCTRGLQK 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26154g00001 111 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 81 - -
Trme26154g00001 111 Pfam Protein kinase domain 1 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26154g00001 111 SUPERFAMILY Protein kinase-like (PK-like) 1 74 IPR011009 -
Trme26154g00001 111 Gene3D Transferase(Phosphotransferase) domain 1 1 88 - -
Trme26154g00001 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26154g00001 Trme-Chr26154 265 1205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26154g00001 1 88 MAP Kinase Kinase Kinase AT3G58760 77.528 2.10e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Trme26154g00001 Pkinase 8.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26154g00001 - - lja:Lj2g3v3109860.2 164.081