Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26148g00001 ATGGATCCAATAACAGCACATGGACATTCACTTCCTCCACCTTTTCACACAGCAAGAGATCTTCATCTTCACCATCAACACCAACAGCAGCAGCAGCAACAACATCACCAATTCCACACTTTACAACAGCAACCAGATCAAGATGAACAAAGTGGAAGCAGCAGCGGTGGCGGCCTCAATCTCACAAACCGCGAAGAAAACAGCCACAACAAGTTCAACACTGATTTTAGCCCCAAATTAGAATCAGGAGGAGGAGGTTCCGGCGGTGACACNGATTCAATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAAAACAAACCAAAACCACCAATCATCATCACACGAGACAGCGCAAACGCGCTAAAAACTCACGTGATGGAAGTTGCAGACGGTTGTGATGTGGTTGAAAGTGTCAACAACTTTGCTAGACGCCGTCAAAGAGGCGTTTGCATCATGAGTGGGACCGGAACGGTTACAAACGTTACACTAAGGCAACCTGCATCGCCTGGAGCGGTCGTTACTCTCCACGGAAGGTTTGAGATTCTTTCACTAGCTGGATCGTTTCTTCCACCACCTGCTCCGCCCGCTGCTTCTGGATTGACGATATATTTAGCGGGCGGACAAGGGCAGGTAGTTGGTGGAAGTGTTGTTGGTGCTTTGATTGCTTCTGGACCTGTTGTTATTATGTCTGCTTCTTTTAGTAACGCTGCTTATGAAAGACTACCTTTGGAAGAAGATGATGCTACTTCTTTGCAACAACTTCAAGGTGGTGGTGGTGGT 786 0.4746 MDPITAHGHSLPPPFHTARDLHLHHQHQQQQQQQHHQFHTLQQQPDQDEQSGSSSGGGLNLTNREENSHNKFNTDFSPKLESGGGGSGGDTDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEEDDATSLQQLQGGGGG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26148g00001 262 FunFam AT-hook motif nuclear-localized protein 123 250 - -
Trme26148g00001 262 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 237 IPR005175 -
Trme26148g00001 262 SUPERFAMILY AF0104/ALDC/Ptd012-like 120 253 - -
Trme26148g00001 262 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 255 IPR014476 GO:0003680
Trme26148g00001 262 ProSiteProfiles PPC domain profile profile. 120 259 IPR005175 -
Trme26148g00001 262 CDD DUF296 124 191 IPR005175 -
Trme26148g00001 262 Gene3D - 123 258 - -
Trme26148g00001 262 MobiDBLite consensus disorder prediction 1 114 - -
Trme26148g00001 262 MobiDBLite consensus disorder prediction 27 77 - -
Trme26148g00001 262 PIRSF ESCAROLA 8 262 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26148g00001 Trme-Chr26148 455 1240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26148g00001 1 249 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 61.852 3.31e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26148g00001 - - vvo:131652408 374.015