Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26116g00001 ATGATATGGTGCTTCTTATTTAAGAATAGGAAACACTCTGTTAGAGACAATCAAGGCTATGTTTTTGCAGGAGCCATAGGATTTCGAAAATTCACTTACTCTGAACTAAAACAAGCAACAAAATGTTTTAGTCAAGAGATTGGAAAGGGTGCTGGAGGAACTGTGTATAAAGGTTTATTATCTAATAATCGTGTTGTGGCTATAAAGCGGCTACATGAAGCAAACCAAGGAGAGAAAGAATTCCTTGCTGAAATTAGCATCATTGGAAGGCTAAATCACATGAATTTGATTGGTATGTGGGGGTATTGTGCAGAGGGAAAACACAGATTGTTGGTTTTTGAGTACATGGAAAAGGGTTCTTTAGCTGATACTTTGTCATCAAATGCACTTGATTGGGCTAAGAGGTATCAAATTGCTGTTGGAACTGCAAAGTGTCTTTCATATATACACGAAGAATGTTTGGAGTGGATTTTGCATTGTGATATAAAGCCCCAAAACATACTAATTGACTCTGATTACCAACCCAAGGTAGCCGATTTTGGGTTGTCTAAGCTACTACAAAGGAACAATCTTGCTAATTCAAGTTTTTCGAGGATGAGAGGAACAAGAGGTTACATGGCACCTGAATGGATTTTCAACTTGCCAATCACTTCCAAGGTGGATGTTTATAGCTATGGAGTTGTCGTGCTAGAGATGATTACCGGAAAAAGTGCAATGATTAGTATCCAAATCACAGATGGTGAAGAGTCTCACAA 755 0.3815 MIWCFLFKNRKHSVRDNQGYVFAGAIGFRKFTYSELKQATKCFSQEIGKGAGGTVYKGLLSNNRVVAIKRLHEANQGEKEFLAEISIIGRLNHMNLIGMWGYCAEGKHRLLVFEYMEKGSLADTLSSNALDWAKRYQIAVGTAKCLSYIHEECLEWILHCDIKPQNILIDSDYQPKVADFGLSKLLQRNNLANSSFSRMRGTRGYMAPEWIFNLPITSKVDVYSYGVVVLEMITGKSAMISIQITDGEESH 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26116g00001 251 SMART serkin_6 41 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26116g00001 251 PANTHER OS07G0415500 PROTEIN 2 242 - -
Trme26116g00001 251 ProSitePatterns Protein kinases ATP-binding region signature. 47 69 IPR017441 GO:0005524
Trme26116g00001 251 Gene3D Transferase(Phosphotransferase) domain 1 116 250 - -
Trme26116g00001 251 Pfam Protein kinase domain 44 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26116g00001 251 Gene3D Phosphorylase Kinase; domain 1 6 115 - -
Trme26116g00001 251 ProSiteProfiles Protein kinase domain profile. 41 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme26116g00001 251 FunFam S-receptor-like serine/threonine-protein kinase 9 115 - -
Trme26116g00001 251 SUPERFAMILY Protein kinase-like (PK-like) 23 241 IPR011009 -
Trme26116g00001 251 FunFam Os07g0541700 protein 116 202 - -
Trme26116g00001 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26116g00001 Trme-Chr26116 486 1240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26116g00001 30 239 Receptor kinase-like Gene Family AT5G20050 40.807 8.26e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme26116g00001 Pkinase 4.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26116g00001 - - mtr:11410392 443.736