Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme260980g00001 AGACCTATTGTTGTGAAGGTGTTGAATCTTGAAACACGTGGAGCAGCAAAGAGTTTCATGGCGGAATGCAAAGCACTAGCAAATATGAAGCATCGGAATCTTGTCAAGATCCTAACATGTTGTTCAAGTGTTGATTATGACGGTGAAGACTTCAAGGCTATTGTTTTTGAGTTCATGTCTAATGGGAGTCTAGAAAAGTTGTTGCACGATATTGAAGGGTCTGATAATCATAATCTCAGCTTCACACAAAGGATAGACATAGCTCTTGATGTTGCTCATGCATTGGATTATCTTCACAATGACACAGAGCAAGTTGTAGTTCATTGTGATGTTAAGCCAAGCAATGTTCTTCTTGATGATGACTTTGTAGCC 372 0.3925 RPIVVKVLNLETRGAAKSFMAECKALANMKHRNLVKILTCCSSVDYDGEDFKAIVFEFMSNGSLEKLLHDIEGSDNHNLSFTQRIDIALDVAHALDYLHNDTEQVVVHCDVKPSNVLLDDDFVA 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme260980g00001 124 SUPERFAMILY Protein kinase-like (PK-like) 2 123 IPR011009 -
Trme260980g00001 124 PANTHER OS04G0122200 PROTEIN 4 124 - -
Trme260980g00001 124 Pfam Protein kinase domain 3 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme260980g00001 124 ProSiteProfiles Protein kinase domain profile. 1 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme260980g00001 124 Gene3D Transferase(Phosphotransferase) domain 1 1 124 - -
Trme260980g00001 124 ProSitePatterns Serine/Threonine protein kinases active-site signature. 106 118 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme260980g00001 Trme-Chr260980 1 372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme260980g00001 3 124 Receptor kinase-like Gene Family AT3G47570 53.968 1.55e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme260980g00001 Pkinase 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme260980g00001 - - mtr:11438431 217.624