Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26070g00001 AGAAACCCTAAAACGCGTGCAACTCTCTTTCTCGTTCAAACGCAGCTCTCATTGAAACTCCCTCTCAACGAAGCTCATTCACGAAGTTCAAACTCAGTCTCAATTTCCCAAGTAAATTCTCTTGAAAAGTTTCTTCAAGAGAGGATTAAGGTCGGTGGCCAAGCCGGTCCTCCCGGTGATTCCGTCACCGTTAGCAGGGACAAGTCCAAGATCACTGTTACCTCTGACAGTAACTTTTCCAAGAGCTCCATTGATGATCAGGTCCTGGTTGACATTTCTAAGCCGACTGTTGGATATCTTGATGATGCCGAGATGGAGGTTGTTCATGTCCTTGAGTCAAAGGGTGTCAAGATGGTTCCTTTCAAACTGAATTACACAGTTGATTCAGTTCAA 393 0.4478 RNPKTRATLFLVQTQLSLKLPLNEAHSRSSNSVSISQVNSLEKFLQERIKVGGQAGPPGDSVTVSRDKSKITVTSDSNFSKSSIDDQVLVDISKPTVGYLDDAEMEVVHVLESKGVKMVPFKLNYTVDSVQ 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26070g00001 131 Pfam Ribosomal L22e protein family 34 83 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trme26070g00001 131 PANTHER 60S RIBOSOMAL PROTEIN L22 35 83 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trme26070g00001 131 Gene3D - 28 126 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26070g00001 Trme-Chr26070 1 1241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26070g00001 35 81 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 72.340 2.19e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26070g00001 - K02891 gmx:100810067 90.5077