Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26025g00001 CCAGTAATGATTCCTAAGATGAGGATGCAAGAACAGATGGCGATTGAAGAAGCTGCTTCTGCTGGAATGAAAAGCATGGAACATTTCATTCGTGTGCTTTCTTCTTCATCTTCTTCTTCTTCGTCTTCTGATCAACGAAGCCGTTTAGATCTGGTCAATAAACTTGATTGTACTGAAATTACTGATTTCACTGTTTCTAAGTTCAAACAGGTTATTAATTTGTTGAATCGTACCGGTCACGCTCGCTTTCGTCGTGCACCGTCCAATTTTTCTTCTTCAACTTCTTCTTCTCAATTTCAATCACAGATTCAATCTGAAAAATTCAACCCTCAACCACAGTCAACTACTCTTGTTTTTGCAAAACCAACTCAAACAGTTAAGCCAATTCCAAATCTGAAACCCAAACAGAACCAATCTACCGATTTATCGGTTTCTCAATACTCTAAATCGAAGGAAGCCTACAGCGTCTCCACCACTACTTCCTCCTTCCTTTCCACCATCACCGGAGATGGAAGTGTCTCCGACGGCAAAATAGGTCCTATCATCTCCTCCGGTAAGCCACCTCTCGCTTCATCTCANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANCTCCGGTCCCTGCCATTGCTCCAAGAGAAGAAAATCTCGCGTGAAGAGAACAATTCGCGTTCCAGCAATAAGTTCCAAGGTTGCTGATATTCCCGCAGATGAATTCTCATGGAGGAAATACGGTCAAAAACCTATTAAAGGTTCACCTTACCCACGGTAA 783 0.3997 PVMIPKMRMQEQMAIEEAASAGMKSMEHFIRVLSSSSSSSSSSDQRSRLDLVNKLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSNFSSSTSSSQFQSQIQSEKFNPQPQSTTLVFAKPTQTVKPIPNLKPKQNQSTDLSVSQYSKSKEAYSVSTTTSSFLSTITGDGSVSDGKIGPIISSGKPPLASSXXXXXXXXXXXXXXXXSGPCHCSKRRKSRVKRTIRVPAISSKVADIPADEFSWRKYGQKPIKGSPYPR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26025g00001 260 SUPERFAMILY WRKY DNA-binding domain 237 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme26025g00001 260 Pfam Plant zinc cluster domain 207 237 IPR018872 -
Trme26025g00001 260 Gene3D WRKY domain 218 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme26025g00001 260 ProSiteProfiles WRKY domain profile. 234 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme26025g00001 260 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 260 IPR044810 GO:0003700
Trme26025g00001 260 Pfam WRKY DNA -binding domain 241 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme26025g00001 260 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26025g00001 Trme-Chr26025 324 1214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26025g00001 8 260 WRKY Transcription Factor Family AT4G31550 48.227 6.70e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme26025g00001 Plant_zn_clust 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26025g00001 - - gmx:732589 280.411