Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme26017g00001 ATGGAAGAGGAAATTTCAAAGGAGAAGAATGACAAACAAGAGTCACCAAAAGAAATCCGATACCGAGGAGTGAGGCGGCGTCCATGGGGAAAATATGCGGCCGAGATTCGCGACCCAGCTCGAAAAGGTGCCCGTGTGTGGCTAGGTACATTTCTCACGGCGGAAGAAGCTGCGAGAGCTTATGATCGTGCCGCCTTTGAAATGAGAGGTGCTTTAGCCATTCTCAATTTTCCACATGAGTATCCATTTCTCAACTCCTCTTCTTCATCATCATCATCATTAGCACCTAATCCACATTCATCTTCTAGCTATGAATCATTATTGCCTTCAAATTACCAAAATGAGCATGGAAAAGAAGTCATTGAGTTTGAATGTTTGGATGATAAATTGTTAGAGGAACTTCTTGATTGTGATGAGAGTGAAACTACCACTCACAAAAACTTGCCAAAGTANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNGAGAATCTAGTGAAACATGAAATGTGTTTTAAAATGTGA 528 0.3845 MEEEISKEKNDKQESPKEIRYRGVRRRPWGKYAAEIRDPARKGARVWLGTFLTAEEAARAYDRAAFEMRGALAILNFPHEYPFLNSSSSSSSSLAPNPHSSSSYESLLPSNYQNEHGKEVIEFECLDDKLLEELLDCDESETTTHKNLPKXXXXXXXXXXXXXENLVKHEMCFKM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme26017g00001 175 MobiDBLite consensus disorder prediction 87 108 - -
Trme26017g00001 175 MobiDBLite consensus disorder prediction 1 20 - -
Trme26017g00001 175 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Trme26017g00001 175 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Trme26017g00001 175 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Trme26017g00001 175 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Trme26017g00001 175 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Trme26017g00001 175 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677
Trme26017g00001 175 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Trme26017g00001 175 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Trme26017g00001 175 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Trme26017g00001 175 PANTHER DNA-BINDING DOMAIN 8 141 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme26017g00001 Trme-Chr26017 514 1041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme26017g00001 17 139 AP2-EREBP Transcription Factor Family AT3G23230 61.111 3.02e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme26017g00001 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme26017g00001 - - gmx:100810414 144.821