Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25995g00001 ATGGATGTAGATAAGAACATCTCGTCTGTCGAAATTGTTGCCAGGGCTGCTGTTTTCGACAAGGCAAATGTGGAGGCAGGTATTATGAGTGAACCCCTTGCTGTAGCATTGAGCCTTGGAGACGAAACAGGAGTTAGATCTGATCCGATGCCTACTACAGTTGTTCTTCATCCAATGCCTCTTGAAAAAGGGGCGAGCGGAACAGTCGGTCGGAGTGTTTTTGAATTGGATTGTACCCCACTTTGGGGATTTACATCTTTGTGTGGAAAAAGACCCGAGATGGAAGATGCTGTTGCGATTGCACCTCGGATGTTGAAAATTCCTATTCAAATGCTAAATGGTAGCAAAAAGTATGATGAAATGAGCAAGGATTTTAATCAGCAGACAGTTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCGCTCAGGTAGCAGATTATTGTCGTGATCGTATGCATTTGGCCTTAGCAGAGGAAATTGAATTGCTCAAGGAAGGTCTTATAATTGGAAGTACCAAGGATGATTGTCAAGATTTATGGAGAAAAGCTTTCACTACTTGTTTTGTGAAAGTTGATGATGAAGTTGGGGGAAAAGCTAATCGTGAACCTGTTGCACCAGAGACTGTTGGTTCCACTGCTGTTGTAGCTATTGTTTGTTCATCTCATATTATAGTCTCAAACTGTGGTGATTCGAGGGCGGTTCTATGTCGTGGAAAGGAACCCTTGGCTTTATCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNATGTCTGATTGTGATATGGTAGCCAAATCGAGATGA 858 0.3858 MDVDKNISSVEIVARAAVFDKANVEAGIMSEPLAVALSLGDETGVRSDPMPTTVVLHPMPLEKGASGTVGRSVFELDCTPLWGFTSLCGKRPEMEDAVAIAPRMLKIPIQMLNGSKKYDEMSKDFNQQTVHFFGVYDGHGGAQVADYCRDRMHLALAEEIELLKEGLIIGSTKDDCQDLWRKAFTTCFVKVDDEVGGKANREPVAPETVGSTAVVAIVCSSHIIVSNCGDSRAVLCRGKEPLALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSDCDMVAKSR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25995g00001 285 SMART PP2C_4 71 250 IPR001932 -
Trme25995g00001 285 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Trme25995g00001 285 CDD PP2Cc 83 245 IPR001932 -
Trme25995g00001 285 ProSiteProfiles PPM-type phosphatase domain profile. 81 285 IPR001932 -
Trme25995g00001 285 Coils Coil 244 245 - -
Trme25995g00001 285 PANTHER PROTEIN PHOSPHATASE 59 245 IPR015655 GO:0004722|GO:0006470
Trme25995g00001 285 SUPERFAMILY PP2C-like 77 246 IPR036457 -
Trme25995g00001 285 Gene3D - 72 249 IPR036457 -
Trme25995g00001 285 Pfam Protein phosphatase 2C 107 245 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25995g00001 Trme-Chr25995 10 1158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25995g00001 44 245 PP2C-type Phosphatase Gene Family AT1G72770 55.660 3.16e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25995g00001 K14497 - gmx:100791754 342.043