Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25990g00001 TCAGAAGCAGCATGGATCATTAAGGATCGTTCGCCTCCTCCAAATTGGCCCGGTCAAGGCCATGTTGATATCAAAGACTTGCAGGTTAGATATCGTCCAAACACTCCTTTGGTTCTTAAAGGAATTACTCTAAGCATTAATGGAGGAGAAAAGGTTGGTGTTGTTGGTCGAACGGGAAGTGGAAAATCAACTTTGATTCAAGTTTTCTTCAGACTGGTGGAACCAANCGGAGGGAAAATAATCATTGATGGCATTGACATATGTGCCTTAGGACTTCATGATCTCAGATCTCGATTCGGTATCATCCCTCAGGAGCCTGTCCTTTTCGAAGGAACCGTCAGAAGTAACATTGATCCAACTGGACAGTATACAGATGATGATATCTGGAAGAGTTTGGATCGGTGTCAACTGAAAGATGCAGTGGCTTCAAAGCCTGAGAAACTTGACTCATTAGTGGTTGACAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGTTGCTTTGTTTAGGGAGAGTTATGCTTAAGCAAAGCAGGTTGTTATTTATGGACGAAGCTACTGCTTCTGTCGATTCTCAAACCGATGCTGTAATTCAGAAGATCATTAGAGAGGATTTTGCAGCGCGTACCATCATCAGTATTGCTCATAGGATACCAACAGTCATGGACTGCGATCGAGTGTTAGTTGTAGATGCAGGACGCGCGAAAGAATTTGACACACCTTCAAACTTGCTCCAGAGGCAATCACTGTTTGCAGCTTTGGTTCAAGAGTATGCCAACCGTTCTGCCGGACTGTAA 795 0.4415 SEAAWIIKDRSPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPXGGKIIIDGIDICALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDDIWKSLDRCQLKDAVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRAKEFDTPSNLLQRQSLFAALVQEYANRSAGL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25990g00001 264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 256 IPR003439 GO:0005524
Trme25990g00001 264 Pfam ABC transporter 39 187 IPR003439 GO:0005524
Trme25990g00001 264 Gene3D - 5 257 IPR027417 -
Trme25990g00001 264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 255 IPR027417 -
Trme25990g00001 264 SMART AAA_5 48 232 IPR003593 GO:0016887
Trme25990g00001 264 CDD ABCC_MRP_domain2 20 240 - -
Trme25990g00001 264 FunFam ABC transporter C family member 3 5 256 - -
Trme25990g00001 264 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25990g00001 Trme-Chr25990 7 1241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25990g00001 20 262 Calmodulin-binding Proteins AT2G36910 31.200 1.12e-34 130