Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme259548g00001 CGCATCCATTTGGCCTTGGCTGAGGAAATAGAATTTGTTAAGGAAGGTCTAATCAATGGTAGTATCAAGGATGGTTGCCAAGATCAGTGGAAAAAAGCTTTCACCAATTGTTTCTTAAAGGTTGATGCTGAAATTGGCGGAACAACTAATAATGAAGCTATTGCGCCAGAAACTGTTGGCTCCACTGCTGTTGTTGCTCTTATATGTTCATCTCATATTATAGTTGCGAATTGTGGTGATTCAAGAGCCGTTCTTTGTCGTGGCAAAGAACCAATGGCGTTATCAGTGGACCACAAAGTAAGTTGCTTCTAA 312 0.4071 RIHLALAEEIEFVKEGLINGSIKDGCQDQWKKAFTNCFLKVDAEIGGTTNNEAIAPETVGSTAVVALICSSHIIVANCGDSRAVLCRGKEPMALSVDHKVSCF 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme259548g00001 103 CDD PP2Cc 1 102 IPR001932 -
Trme259548g00001 103 Pfam Protein phosphatase 2C 29 101 IPR001932 -
Trme259548g00001 103 PANTHER PROTEIN PHOSPHATASE 6 101 IPR015655 GO:0004722|GO:0006470
Trme259548g00001 103 Gene3D - 1 102 IPR036457 -
Trme259548g00001 103 ProSiteProfiles PPM-type phosphatase domain profile. 1 103 IPR001932 -
Trme259548g00001 103 SUPERFAMILY PP2C-like 26 101 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme259548g00001 Trme-Chr259548 3 314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme259548g00001 1 99 PP2C-type Phosphatase Gene Family AT1G17550 60.909 6.18e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme259548g00001 K14497 - gmx:100791754 182.57