Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2594g00001 ATGTTGAAGTTTCTTGATTTGAGCTATAACATGTTATCAGGACCTGTTAATGATACACTTTCTGGTTTGAATTCCATTGAAGTGTTGAATGTTTCGAGCAATTCATTTTCCGGAGAGTTCTTTCATCTTGTGGAATTTCCACATCTACTTGCTCTCAACATGAGTAACAATTCATTCACAGGTAGATTCAGTTCTCAGCTTTGTAATTCTTCTAAGAATCTCCACACACTTCATTTATCTTCGAACCATTTCGATGGTAATCTTGAAGGTTTGAACAACTGTAACAAATCTCTCCAAAGGTTGCATTTGGATTCCAATTCATTTTCTGGTCCTTTACCAGATTCTTTGTATTCAATGTTATCCTTGGAGCAATTATCACTCTCTGCCAACAATTTTTCTGGCATGTTAAGCAATGAGTTAAGTAAGCTTTCTAGCCTAAAATCTCTTGTGGTTTCTGCAAACCGTTTTTCAGGCGAAATTCCAAATGTGTTTGAGAATTTTTTGCAGTTAGAACAATTTGTAGCACATGCTAATTCATTTTCTGGATCATTACCTTCCACTTTGGCTTTATGCACTAAGCTTAGAATTCTTGATCTTAAGAATAATTCACTGTCAGGTTCAATTGATCTTAATTTCACCGGTTTGTCCAATCTTTGTTCACTCGATCTTGCTAGTAATCATTTTACCGGACCACTTCCGAGTTCGTTGTCCTATTGTCATGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGCTTAAATGGTTCTATACCTGAAAGCTATGCCAAATTATCTTCTCTTTTGTTTGTGTCATTTTCAAACAATAGCTTAGTGAATTTATCTGGTGCACTTTCTGTTCTTCAGAACTGCAAAAACCTCACAACTCTAATCCTTACTAAGAATTTCCGCGGCGAAGAAATTCCGCAAAGTTTACCATCAGCAGGATTTGAGAGTCTTATGGTGTTAGCACTTGGAAACTGTGGTCTGAAAAGTTATATCCCTTCTTGGCTATTAAAGTGCAAGAAATTGGCGGTACTTGATTTGTCTTGGAACTCATTGAATGGTAGTATTCCTTCGTGGATTGGTGAAATGGACAGTTTGTTCTATTTGGATTTCTCGAACAATTCTCTCACGGGAGAAATACCGAAAAGTTTGACAGAGTTGAAGGGACTGGTGTGTTCAAATTGTGGAAGACCGAATTTCACTTCTTATGCTTTCATTCCTCTCTTTGTGAAGAGAAATACTAGTACTAGTGGTTTGCAATATAATCAAGCTTCAAGTTTCCCTCCTTCAATTTTATTGAGCAATAACATGTTAAATGGAAGTATATGGCCCGAAATCGGTAACTTGAAGGCACTTCATGTGTTGGATGTCAGCAGGAACAATATCAGCGGCACAATTCCGAGTAGTATTTCGGAGATGGAGAATTTGGAAACATTGGATTTATCTTATAATGATCTATCTGGAACAATCCCTCCTTCATTTAATAACCTCACATTCTTGTCGAAGTTCAGTGTGGCGCATAATCACTTGCAAGGACCGATTCCAAGTGGAGGGCAGTTTCTAAGTTTCCCTAGTTCAAGCTTTGAGGGTAATTTGGGACTTTGCAGGGACATTGATATCGATAGTACTCGATGCAAAGTTGTTAACAACATGAGACCAAATTTGCCTTCTGGTTCGTCAAAAAAAATTAGTAGAAGCAGCGTACTTGGCATAACAATCAGCATAGGGATAGGGCTTGCTTTGTTGCTTGCAATTATTGTGCTAAGAATGTCAAAGAGGGAAGATAAACCTATTGATAACTTCGATGAGGAGATGAATACTAGGNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAATTCAGATTGCAAGGACCTCACAGTTACTGATTTGTTAAAAGCAACAAACAATTTCAACCAGGCAAACATTGTTGGCTGTGGTGGCTTCGGTCTTGTTTACAAGGCGTATCTTCCGAATGGCATGAAAGCGGCCGTCAAGAGGCTTTCTGGCGACTGTGGTCAGATGGAACGCGAGTTCCAAGCCGAAGTTGAGGCCCTCTCTAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTCGGCATGGCAACGACCGATTGCTAATTTACTCGTATATGGAGAATGGTAGCTTGGATTATTGGCTTCACGAGTGTGTGGATGGAAATTCAGCTCTGAAATGGGATATTCGACTCAAGATTGCACAAGGCGCGGCTCGTGGATTAGCTTACTTGCACAAGGGGTGTGAACCGTTCATAGTTCACCGCGACGTTAAATCTAGCAACATACTTTTGGATGATAAGTTTGAAGCTCATTTAGCCGATTTCGGTCTCTCAAGACTACTTTCACCGTACGATACTCACGTCACAACAGACTTGGTAGGAACTTTAGGGTATATTCCACCAGAATATAGTCAGACACTGACAGCAACATTCCGCGGTGATGTCTATAGTTTCGGCGTTGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCTGT 2543 0.3885 MLKFLDLSYNMLSGPVNDTLSGLNSIEVLNVSSNSFSGEFFHLVEFPHLLALNMSNNSFTGRFSSQLCNSSKNLHTLHLSSNHFDGNLEGLNNCNKSLQRLHLDSNSFSGPLPDSLYSMLSLEQLSLSANNFSGMLSNELSKLSSLKSLVVSANRFSGEIPNVFENFLQLEQFVAHANSFSGSLPSTLALCTKLRILDLKNNSLSGSIDLNFTGLSNLCSLDLASNHFTGPLPSSLSYCHELKVLSLARNGLNGSIPESYAKLSSLLFVSFSNNSLVNLSGALSVLQNCKNLTTLILTKNFRGEEIPQSLPSAGFESLMVLALGNCGLKSYIPSWLLKCKKLAVLDLSWNSLNGSIPSWIGEMDSLFYLDFSNNSLTGEIPKSLTELKGLVCSNCGRPNFTSYAFIPLFVKRNTSTSGLQYNQASSFPPSILLSNNMLNGSIWPEIGNLKALHVLDVSRNNISGTIPSSISEMENLETLDLSYNDLSGTIPPSFNNLTFLSKFSVAHNHLQGPIPSGGQFLSFPSSSFEGNLGLCRDIDIDSTRCKVVNNMRPNLPSGSSKKISRSSVLGITISIGIGLALLLAIIVLRMSKREDKPIDNFDEEMNTRXXXXXXXXXXXXXXXXXXXNSDCKDLTVTDLLKATNNFNQANIVGCGGFGLVYKAYLPNGMKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYMENGSLDYWLHECVDGNSALKWDIRLKIAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLSPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPV 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2594g00001 848 Gene3D Phosphorylase Kinase; domain 1 613 721 - -
Trme2594g00001 848 SMART LRR_typ_2 473 496 IPR003591 -
Trme2594g00001 848 SMART LRR_typ_2 215 239 IPR003591 -
Trme2594g00001 848 SMART LRR_typ_2 449 472 IPR003591 -
Trme2594g00001 848 SMART LRR_typ_2 119 142 IPR003591 -
Trme2594g00001 848 SMART LRR_typ_2 363 387 IPR003591 -
Trme2594g00001 848 SMART LRR_typ_2 263 286 IPR003591 -
Trme2594g00001 848 SMART LRR_typ_2 143 166 IPR003591 -
Trme2594g00001 848 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 616 721 - -
Trme2594g00001 848 FunFam Tyrosine-sulfated glycopeptide receptor 1 212 550 - -
Trme2594g00001 848 SUPERFAMILY L domain-like 2 90 - -
Trme2594g00001 848 ProSiteProfiles Leucine-rich repeat profile. 475 497 IPR001611 GO:0005515
Trme2594g00001 848 Gene3D Ribonuclease Inhibitor 242 545 IPR032675 -
Trme2594g00001 848 Gene3D Transferase(Phosphotransferase) domain 1 722 848 - -
Trme2594g00001 848 SMART serkin_6 646 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2594g00001 848 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 113 208 - -
Trme2594g00001 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Trme2594g00001 848 Gene3D Ribonuclease Inhibitor 1 165 IPR032675 -
Trme2594g00001 848 SUPERFAMILY L domain-like 94 381 - -
Trme2594g00001 848 FunFam Os07g0541700 protein 722 811 - -
Trme2594g00001 848 ProSiteProfiles Protein kinase domain profile. 646 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2594g00001 848 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 139 847 - -
Trme2594g00001 848 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515
Trme2594g00001 848 Pfam Leucine rich repeat 317 376 IPR001611 GO:0005515
Trme2594g00001 848 Pfam Leucine rich repeat 451 510 IPR001611 GO:0005515
Trme2594g00001 848 Pfam Protein kinase domain 647 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2594g00001 848 SUPERFAMILY L domain-like 332 535 - -
Trme2594g00001 848 Gene3D Ribonuclease Inhibitor 166 241 IPR032675 -
Trme2594g00001 848 PRINTS Leucine-rich repeat signature 473 486 - -
Trme2594g00001 848 PRINTS Leucine-rich repeat signature 2 15 - -
Trme2594g00001 848 SUPERFAMILY Protein kinase-like (PK-like) 631 847 IPR011009 -
Trme2594g00001 848 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2594g00001 Trme-Chr2594 1 2543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2594g00001 5 848 Receptor kinase-like Gene Family AT1G55610 34.946 3.29e-144 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trme2594g00001 Pkinase 2.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2594g00001 - - mtr:25487312 1420.99