Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25943g00001 ATGACTCCAGCTGCTGATGTGAGTCTGTTGACTGATAATGGAAGTACCAAGGATGATCTGAAGCTTCCCACTGATGATGGACTGCTTACTCAGATTAAAGATGGATTTGCTGAAGGAAAAGATCTTGTGGTTTCTGTCATGTCTGCAATGGGAGAAGAACAGATATGTGCCCTGAAGGACATTGGTAGTAATTTGTCATATGCATGTGTGCGCAATAAACTTGACAAGATGGAAACTGCCTTGAGCTTGAAACTCATGAAAGCTTGA 267 0.4195 MTPAADVSLLTDNGSTKDDLKLPTDDGLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGSNLSYACVRNKLDKMETALSLKLMKA 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25943g00001 88 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 7 62 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Trme25943g00001 88 FunFam Eukaryotic translation initiation factor 5A 5 63 - -
Trme25943g00001 88 SUPERFAMILY Nucleic acid-binding proteins 7 61 IPR012340 -
Trme25943g00001 88 Gene3D - 2 63 IPR012340 -
Trme25943g00001 88 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 7 59 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trme25943g00001 88 SMART eIF_5a_2 1 59 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25943g00001 Trme-Chr25943 256 901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25943g00001 7 62 Eukaryotic Initiation Factors Gene Family AT1G69410 83.929 2.86e-29 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25943g00001 K03263 K02180 csav:115698782 107.842