Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme259028g00001 ATGGCTCCAGTTTACATGGCATTCCTTCGATTCATGGGAGACGAGAACGAAGCTCGGAACTATACTTATAGCCTCGAGGTTGGAGCAAATGGAAGAAAACTCACTTGGGAGGGCACACCGCGGAGTATCCGTGATAGCCACCGTAAAGTTCGAGATAGCCACGATGGTCTCATAATTCAACGAAATATGGCCCTCTTTTTCTCTGGTGGTGATAGGAAGGAACTGAAACTAAGAGTCACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGAGTGTGCATACCAAATCTTTGCAACTGA 306 0.4575 MAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLTWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCN 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme259028g00001 101 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 80 IPR008974 GO:0005515
Trme259028g00001 101 SUPERFAMILY TRAF domain-like 2 84 - -
Trme259028g00001 101 Pfam Seven in absentia protein family 2 80 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trme259028g00001 101 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme259028g00001 Trme-Chr259028 4 309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme259028g00001 1 87 C3H Transcription Factor Family AT2G41980 81.609 1.16e-49 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme259028g00001 K04506 - twl:119985667 207.223