Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25887g00001 ATGAAGGCTGATGTAAATGCCCAACTTCCAAAGAAAACCGAGCATGTTCTGTTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTGGATGGAGGCAGAAATTCGCTTTACGGAATTGATGTGATGCGCAAGATCTGCAACCATCCGGACCTACTTGAAAGGGAACATGCCTTCAGCAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAGCAGGGCCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTCTGGTCATATTTACCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGATGAATTTAATGCCTCGATTGAGATTTTTGTTTTCATTTTAACAACCAAAGTAGGGGGGTTGGGGACAAATCTTACTGGTGCAGATAGAGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAG 561 0.4118 MKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTSGHIYRRMDGLTPVKQRMALMDEFNASIEIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25887g00001 187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 187 IPR027417 -
Trme25887g00001 187 CDD SF2_C_SNF 82 187 - -
Trme25887g00001 187 PANTHER SNF2/RAD54 FAMILY MEMBER 1 187 - -
Trme25887g00001 187 SMART helicmild6 113 187 IPR001650 -
Trme25887g00001 187 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 87 187 IPR001650 -
Trme25887g00001 187 Gene3D - 6 187 IPR027417 -
Trme25887g00001 187 Pfam Helicase conserved C-terminal domain 89 187 IPR001650 -
Trme25887g00001 187 Pfam SNF2-related domain 1 65 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25887g00001 Trme-Chr25887 345 905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25887g00001 68 187 RAD5 or RAD16-like Gene Family AT1G11100 37.500 2.24e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme25887g00001 Helicase_C 8.9e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25887g00001 K10841 - vum:124819445 356.295