Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25857g00001 ATGGCGAGTATTTTTCGAGAACTCCCGGATAACCTGGTGGAGTTGGAGTTGAATAAAGAAAGAGAACTTCAATCAAGTGATCAAGGCTTGACATCAAACAATGCTTCCACTCCATCAATTTTGGATCTACTGANATTGAATGCTCCAGAGTGGCCCTATGCAATTCTTGGGTCAGTAGGTGCAGTTTTGGCTGGCATGGAAGCTCCTCTATTTGCCCTTGGAATCACCCACATTTTGATAGCATTTTACTCTCTTAACGGTTCCAAGATCAAGCAAGAAGTTGATCATGTAGCTCTTATATTTGTTGGAGTGGCTGTTGTTACCATACCTATTTATCTATTGCAACACTACTTCTATTCATTAATGGGAGAGCGTCTCACCTCCCGTGTACGTTTATTAATGTTCTCAGCTATTCTTATCAATGAAGTCGCATGGTTTGATCTAGATGAGAACAATACTGGCTCATTAACAGCAATGTTAGCTGCGGATGCAACATTAGTAAGAAGTGCTCTAGCCGACAGACTCTCAACCATTGTGCAGAACGTAGCTCTCACTCTAACGGCATTTGTTATTGCCTTCACATTGAGTTGGAAACTAACATTAGTGGTTGCAGCTTGCCTTCCCCTTCTCATAGGAGCTTCCATCACAGAGCAATTATTTCTCAAGGGATTTGGTGGAGATTACAGCCATGCATATTCTAAAGCAACTTCTTTGGCTCGGGAAGCTATTGCCAACATACGTACGGTTGCTGCTTTTGGTGCAGAAGAT 768 0.4219 MASIFRELPDNLVELELNKERELQSSDQGLTSNNASTPSILDLLXLNAPEWPYAILGSVGAVLAGMEAPLFALGITHILIAFYSLNGSKIKQEVDHVALIFVGVAVVTIPIYLLQHYFYSLMGERLTSRVRLLMFSAILINEVAWFDLDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTLTAFVIAFTLSWKLTLVVAACLPLLIGASITEQLFLKGFGGDYSHAYSKATSLAREAIANIRTVAAFGAED 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25857g00001 256 Gene3D ABC transporter type 1, transmembrane domain 20 256 IPR036640 GO:0005524|GO:0016020
Trme25857g00001 256 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 31 255 IPR039421 -
Trme25857g00001 256 SUPERFAMILY ABC transporter transmembrane region 43 256 IPR036640 GO:0005524|GO:0016020
Trme25857g00001 256 CDD ABC_6TM_Pgp_ABCB1_D2_like 44 256 - -
Trme25857g00001 256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 54 256 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme25857g00001 256 Pfam ABC transporter transmembrane region 56 256 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25857g00001 Trme-Chr25857 1 1186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25857g00001 39 255 Calmodulin-binding Proteins AT2G36910 43.779 7.59e-53 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25857g00001 K05658 - gmx:100788391 411.379